protected virtual void ValidateInContext(ImportedQuantityDTO dto, QuantityImporterDTO quantityImporterDTO, TImportTarget buildingBlock, DataRow row, int rowIndex)
{
if (IsUpdate(dto, buildingBlock) && !ValidateDTOForUpdate(dto))
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Validation.ValueNotValidForUpdate(dto.Path.ToString()));
}
if (IsNewInsert(dto, buildingBlock) && !ValidateDTOForInsert(dto))
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Validation.ValueNotValidForInsert(dto.Path.ToString()));
}
if (string.IsNullOrEmpty(dto.Name))
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Exceptions.ImportedStartValueMustHaveName);
}
if (string.IsNullOrEmpty(dto.ContainerPath.PathAsString))
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Exceptions.ImportedStartValueMustHaveContainerPath);
}
if (quantityImporterDTO.QuantitDTOs.Any(x => Equals(x.Path, dto.Path)))
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Exceptions.DuplicatedImportedStartValue(dto.Path.PathAsString));
}
}
protected override ImportedQuantityDTO MapQuantityFromRow(DataTable table, DataRow row, int rowIndex)
{
if (row.ItemArray.Count() < DataTableRowIndexes.COLUMNS)
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Exceptions.TableShouldBeNColumns(DataTableRowIndexes.COLUMNS));
}
var dimension = GetDimension(table, rowIndex, DataTableRowIndexes.UNIT, DataTableRowIndexes.DIMENSION);
var containerPath = GetPath(row, DataTableRowIndexes.CONTAINER_PATH);
var quantity = GetQuantity(table, rowIndex, DataTableRowIndexes.VALUE);
var parameterName = GetQuantityName(row, DataTableRowIndexes.NAME);
var dto = new ImportedQuantityDTO
{
Dimension = dimension,
ContainerPath = new ObjectPath(containerPath),
Name = parameterName,
DisplayUnit = dimension.Unit(row[DataTableRowIndexes.UNIT].ToString()),
IsQuantitySpecified = true,
IsScaleDivisorSpecified = false
};
dto.QuantityInBaseUnit = dto.ConvertToBaseUnit(quantity);
return(dto);
}
public IParameterStartValue MapFrom(ImportedQuantityDTO input)
{
var psv = _psvCreator.CreateParameterStartValue(input.Path, input.QuantityInBaseUnit, input.Dimension);
psv.DisplayUnit = input.DisplayUnit;
return(psv);
}
protected override void ValidateInContext(ImportedQuantityDTO dto, QuantityImporterDTO quantityImporterDTO, IStartValuesBuildingBlock <IParameterStartValue> buildingBlock, DataRow row, int rowIndex)
{
base.ValidateInContext(dto, quantityImporterDTO, buildingBlock, row, rowIndex);
var builder = buildingBlock[dto.Path];
if (builder != null)
{
ValidateDtoAgainstBuilderForUpdate(builder, dto, row, rowIndex);
}
}
protected override void ValidateInContext(ImportedQuantityDTO dto, QuantityImporterDTO quantityImporterDTO, IStartValuesBuildingBlock <IMoleculeStartValue> buildingBlock, DataRow row, int rowIndex)
{
base.ValidateInContext(dto, quantityImporterDTO, buildingBlock, row, rowIndex);
if (isDimensionRequired(dto) && !isCorrectDimensionForDimensionMode(_reactionDimensionRetriever.SelectedDimensionMode, dto))
{
throw new ImportQuantityDTOsFromDataTablesMapperException(
row, rowIndex,
AppConstants.Exceptions.ImportedDimensionNotRecognized(getDimensionConstantForProject(_reactionDimensionRetriever.SelectedDimensionMode),
_dimensionFactory.Dimension(getDimensionConstantForProject(_reactionDimensionRetriever.SelectedDimensionMode)).GetUnitNames()));
}
}
public IMoleculeStartValue MapFrom(ImportedQuantityDTO input)
{
var msv = _msvCreator.CreateMoleculeStartValue(input.ContainerPath, input.Name, input.Dimension, input.DisplayUnit);
msv.StartValue = input.QuantityInBaseUnit;
msv.DisplayUnit = input.DisplayUnit;
msv.IsPresent = input.IsPresent;
msv.NegativeValuesAllowed = input.NegativeValuesAllowed;
if (input.IsQuantitySpecified)
{
msv.StartValue = input.QuantityInBaseUnit;
}
if (input.IsScaleDivisorSpecified)
{
msv.ScaleDivisor = input.ScaleDivisor;
}
return(msv);
}
protected override void ValidateInContext(ImportedQuantityDTO dto, QuantityImporterDTO quantityImporterDTO, IMoBiSimulation simulation, DataRow row, int rowIndex)
{
// Skipping base call because the default validation is to stop import when first error occurs
if (IsUpdate(dto, simulation))
{
if (!ValidateDTOForUpdate(dto))
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Validation.ValueNotValidForUpdate(dto.Path.ToString()));
}
ValidateDtoAgainstBuilderForUpdate(dto.Path.TryResolve <IParameter>(simulation.Model.Root), dto, row, rowIndex);
}
if (!IsNewInsert(dto, simulation))
{
return;
}
// +2 because there is a mandatory header row (+1) and this index is 0-based, while excel rows start at 1 (+1)
dto.SetWarning(row, rowIndex + 2, AppConstants.Warnings.CannotAddNewParameterFromImportToSimulation(simulation.Name, dto.Path.ToString()));
dto.SkipImport = true;
}
protected override ImportedQuantityDTO MapQuantityFromRow(DataTable table, DataRow row, int rowIndex)
{
if (row.ItemArray.Count() < DataTableRowIndexes.COLUMNS)
{
throw new ImportQuantityDTOsFromDataTablesMapperException(row, rowIndex, AppConstants.Exceptions.TableShouldBeNColumns(DataTableRowIndexes.COLUMNS));
}
var path = GetPath(row, DataTableRowIndexes.PATH);
var moleculeName = GetQuantityName(row, DataTableRowIndexes.MOLECULE);
var msv = new ImportedQuantityDTO
{
ContainerPath = new ObjectPath(path),
Name = moleculeName,
IsPresent = getIsPresent(row),
IsScaleDivisorSpecified = getIsValueSpecified(row, DataTableRowIndexes.SCALE_DIVISOR),
IsQuantitySpecified = getIsValueSpecified(row, DataTableRowIndexes.VALUE),
NegativeValuesAllowed = getNegativeValuesAllowed(row)
};
msv.ScaleDivisor = msv.IsScaleDivisorSpecified ? getScaleFactor(table, rowIndex) : double.NaN;
if (!msv.IsQuantitySpecified)
{
return(msv);
}
var dimension = GetDimension(table, rowIndex, DataTableRowIndexes.UNIT);
msv.Dimension = dimension;
msv.DisplayUnit = dimension.Unit(row[DataTableRowIndexes.UNIT].ToString());
msv.QuantityInBaseUnit = msv.IsQuantitySpecified ? msv.ConvertToBaseUnit(GetQuantity(table, rowIndex, DataTableRowIndexes.VALUE)) : double.NaN;
return(msv);
}
protected abstract bool ValidateDTOForInsert(ImportedQuantityDTO dto);
protected override bool IsUpdate(ImportedQuantityDTO dto, IMoBiSimulation simulation)
{
return(!IsNewInsert(dto, simulation));
}
protected override IMoBiCommand GetUpdateStartValueInBuildingBlockCommand(IMoleculeStartValuesBuildingBlock startValuesBuildingBlock, ImportedQuantityDTO dto)
{
var scaleDisivor = dto.IsScaleDivisorSpecified ? dto.ScaleDivisor : startValuesBuildingBlock[dto.Path].ScaleDivisor;
var startValue = dto.IsQuantitySpecified ? dto.QuantityInBaseUnit : startValuesBuildingBlock[dto.Path].StartValue;
return(new UpdateMoleculeStartValueInBuildingBlockCommand(startValuesBuildingBlock, dto.Path, startValue, dto.IsPresent, scaleDisivor, dto.NegativeValuesAllowed));
}
protected override IMoBiCommand GetUpdateStartValueInBuildingBlockCommand(IParameterStartValuesBuildingBlock startValuesBuildingBlock, ImportedQuantityDTO dto)
{
return(new UpdateParameterStartValueInBuildingBlockCommand(startValuesBuildingBlock, dto.Path, dto.QuantityInBaseUnit));
}
protected abstract IMoBiCommand GetUpdateStartValueInBuildingBlockCommand(TBuildingBlock startValuesBuildingBlock, ImportedQuantityDTO dto);
protected override bool ValidateDTOForInsert(ImportedQuantityDTO dto)
{
// Cannot insert new values into simulations
return(false);
}
protected abstract bool IsNewInsert(ImportedQuantityDTO dto, TImportTarget importTarget);
protected override bool IsNewInsert(ImportedQuantityDTO dto, IMoBiSimulation simulation)
{
return(dto.Path.TryResolve <IParameter>(simulation.Model.Root) == null);
}
private bool isCorrectDimensionForDimensionMode(ReactionDimensionMode dimensionMode, ImportedQuantityDTO dto)
{
if (dto.Dimension == _dimensionFactory.Dimension(Constants.Dimension.MOLAR_CONCENTRATION) && dimensionMode == ReactionDimensionMode.ConcentrationBased)
{
return(true);
}
if (dto.Dimension == _dimensionFactory.Dimension(Constants.Dimension.AMOUNT) && dimensionMode == ReactionDimensionMode.AmountBased)
{
return(true);
}
return(false);
}
private bool isDimensionRequired(ImportedQuantityDTO dto)
{
return(dto.IsQuantitySpecified);
}
protected override void AddDTOToImportList(QuantityImporterDTO quantityImporterDTO, IStartValuesBuildingBlock <IMoleculeStartValue> importTarget, ImportedQuantityDTO dto)
{
quantityImporterDTO.QuantitDTOs.Add(dto);
if (dto.HasWarning())
{
quantityImporterDTO.AddToLog(dto.GetWarning());
}
quantityImporterDTO.AddToLog(IsNewInsert(dto, importTarget)
? AppConstants.Captions.AddingMoleculeStartValue(dto.Path, dto.ConvertToDisplayUnit(dto.QuantityInBaseUnit), dto.DisplayUnit, dto.IsPresent, dto.Name, dto.NegativeValuesAllowed)
: AppConstants.Captions.UpdatingMoleculeStartValue(dto.Path, dto.ConvertToDisplayUnit(dto.QuantityInBaseUnit), dto.DisplayUnit, dto.IsPresent, dto.Name, dto.NegativeValuesAllowed));
}
protected override bool ValidateDTOForUpdate(ImportedQuantityDTO dto)
{
return(dto.IsQuantitySpecified || dto.IsScaleDivisorSpecified);
}
protected abstract bool ValidateDTOForUpdate(ImportedQuantityDTO dto);
private static void updateImportedQuantityWithQuantityDimension(IWithDimension originalWithDimension, ImportedQuantityDTO dto)
{
var valueInDisplayUnit = dto.ConvertToDisplayUnit(dto.QuantityInBaseUnit);
dto.Dimension = originalWithDimension.Dimension;
dto.DisplayUnit = originalWithDimension.Dimension.Unit(dto.DisplayUnit.Name);
dto.QuantityInBaseUnit = dto.ConvertToBaseUnit(valueInDisplayUnit);
}
protected abstract bool IsUpdate(ImportedQuantityDTO dto, TImportTarget importTarget);
protected override bool IsNewInsert(ImportedQuantityDTO dto, IStartValuesBuildingBlock <IParameterStartValue> importTarget)
{
return(importTarget[dto.Path] == null);
}
protected abstract void AddDTOToImportList(QuantityImporterDTO quantityImporterDTO, TImportTarget importTarget, ImportedQuantityDTO dto);
protected override bool ValidateDTOForInsert(ImportedQuantityDTO dto)
{
return(!double.IsNaN(dto.QuantityInBaseUnit));
}
protected static bool ShouldFormulaBeOverridden(ImportedQuantityDTO quantityDTO, TStartValue startValue)
{
return(quantityDTO.IsQuantitySpecified && startValue.Formula != null);
}
protected override string LogMessageFor(ImportedQuantityDTO dto, IStartValuesBuildingBlock <IParameterStartValue> importTarget)
{
return(IsNewInsert(dto, importTarget)
? AppConstants.Captions.AddingParameterStartValue(dto.Path, dto.ConvertToDisplayUnit(dto.QuantityInBaseUnit), dto.DisplayUnit)
: AppConstants.Captions.UpdatingParameterStartValue(dto.Path, dto.ConvertToDisplayUnit(dto.QuantityInBaseUnit), dto.DisplayUnit));
}
protected override bool IsUpdate(ImportedQuantityDTO dto, IStartValuesBuildingBlock <IParameterStartValue> importTarget)
{
return(!IsNewInsert(dto, importTarget));
}
protected override string LogMessageFor(ImportedQuantityDTO dto, IMoBiSimulation simulation)
{
return(IsNewInsert(dto, simulation)
? AppConstants.Captions.AddingParameterValueToSimulation(dto.Path, dto.ConvertToDisplayUnit(dto.QuantityInBaseUnit), dto.DisplayUnit)
: AppConstants.Captions.UpdatingParameterValueInSimulation(dto.Path, dto.ConvertToDisplayUnit(dto.QuantityInBaseUnit), dto.DisplayUnit));
}
