public FDRSearchEThcDEngine(IProteinCreator proteinCreator, IPeptideCreator peptideCreator, IGlycanCreator glycanCreator, ISpectrumFactory spectrumFactory, ISpectrumProcessing spectrumProcessing, IMonoMassSpectrumGetter monoMassSpectrumGetter, IPrecursorMatcher precursorMatcher, ISpectrumFilter spectrumFilter, ISearchEThcD searchEThcDRunner, IResults results, IReportProducer reportProducer, double pesudoMass = -526.7728) : base(proteinCreator, peptideCreator, glycanCreator, spectrumFactory, spectrumProcessing, monoMassSpectrumGetter, precursorMatcher, spectrumFilter, searchEThcDRunner, results, reportProducer) { this.pesudoMass = pesudoMass; }
public GeneralSearchEThcDEngine( IProteinCreator proteinCreator, IPeptideCreator peptideCreator, IGlycanCreator glycanCreator, ISpectrumFactory spectrumFactory, ISpectrumProcessing spectrumProcessing, IMonoMassSpectrumGetter monoMassSpectrumGetter, IPrecursorMatcher precursorMatcher, ISpectrumFilter spectrumFilter, ISearchEThcD searchEThcDRunner, IResults results, IReportProducer reportProducer ) { // protein this.proteinCreator = proteinCreator; // peptides this.peptideCreator = peptideCreator; // glycans this.glycanCreator = glycanCreator; // spectrum this.spectrumFactory = spectrumFactory; // spectrum processing this.spectrumProcessing = spectrumProcessing; this.monoMassSpectrumGetter = monoMassSpectrumGetter; // glycopeptides this.precursorMatcher = precursorMatcher; this.spectrumFilter = spectrumFilter; // search this.searchEThcDRunner = searchEThcDRunner; // result this.results = results; this.reportProducer = reportProducer; }
public void SetProteinCreator(IProteinCreator creator) { this.fastaReader = creator; }
public FastaSearchRunPeptides(IPeptideCreatorParameter parameter) { fastaReader = new GeneralFastaProteinCreator(); pepRunner = new GeneralPeptideCreator(parameter); }
public FastaSearchRunPeptides() { fastaReader = new GeneralFastaProteinCreator(); pepRunner = new GeneralPeptideCreator(); }
public DoubleDigestionFastaSearchRunPeptides() { parameters = new List <IPeptideCreatorParameter>(); fastaReader = new GeneralFastaProteinCreator(); pepRunner = new DoubleDigestionPeptideCreator(); }