public IEnumerable <GenotypeUseSummaryViewModel> GetCrossSelections(int id)
{
var family = u_repo.GetFamily(id);
if (family == null)
{
return(null);
}
return(family.Genotypes.Where(t => t.IsRoot == false).ToGenotypeUseSummaryViewModel().OrderBy(t => t.OriginalName));
}
public ActionResult Tree(int?id)
{
if (!id.HasValue)
{
return(new HttpStatusCodeResult(HttpStatusCode.BadRequest));
}
//Constants needed by the tree
int treeSize = 15;
int index = 1; //Current location in the array
//root of tree, child to build off of
Genotype root = m_repo.GetGenotype(id.Value);
if (root == null)
{
return(new HttpStatusCodeResult(HttpStatusCode.BadRequest));
}
//Tree to pass to page
List <Genotype> tree = new List <Genotype>();
List <Family> fams = new List <Family>();
//fill list to handle off array errors
for (int i = 0; i < treeSize; i++)
{
tree.Add(new Genotype {
GivenName = ""
});
}
//fill list to handle off array errors
for (int i = 0; i < treeSize; i++)
{
fams.Add(new Family());
}
//add male parent
tree.Insert(index, root);
fams.Insert(index, m_repo.GetFamily(root.FamilyId));
//Increment index
index++;
//Get root parents
Tuple <Genotype, Genotype> parents = m_repo.GetGenotypeParents(root);
//different iteration to handle 0 index
//Female is always first in the tuple
if (parents.Item1 != null)
{
tree.Insert(index, parents.Item1);
fams.Insert(index, m_repo.GetFamily(parents.Item1.FamilyId));
}
else
{
tree.Insert(index, new Genotype {
GivenName = ""
});
fams.Insert(index, new Family()
{
});
}
//Male is second
if (parents.Item2 != null)
{
tree.Insert(index + 1, parents.Item2);
fams.Insert(index + 1, m_repo.GetFamily(parents.Item2.FamilyId));
}
else
{
tree.Insert(index + 1, new Genotype {
GivenName = ""
});
fams.Insert(index + 1, new Family()
{
});
}
//Tree population, through grandparents (index 8), start at father (index 2)
for (int i = 2; i < 8; i++)
{
if (!tree[i].Id.Equals(0)) //if parent is not null
{
parents = m_repo.GetGenotypeParents(tree[i]); //get parents
}
else
{
parents = new Tuple <Genotype, Genotype>(item1: null, item2: null); //new tuple with null genotypes
}
addParents(ref index, ref tree, ref fams, parents);
}
//Send list to view
tree.RemoveAt(0);
fams.RemoveAt(0);
//tree.RemoveRange(15, tree.Count - 15);
ViewBag.genotypeList = tree;
ViewBag.families = fams;
ViewBag.Genotype = root;
return(View());
}
private void updateAccession(AccessionViewModel accession)
{
// update genotype information
Genotype oldGenotype = u_repo.GetGenotype(accession.Id);
var oldGivenName = oldGenotype.GivenName;
var oldOriginalName = oldGenotype.OriginalName;
Genotype genotype = accession.ToGenotype();
genotype.Family = oldGenotype.Family;
genotype.FamilyId = oldGenotype.FamilyId;
genotype.CrossPlanId = oldGenotype.CrossPlanId;
genotype.IsPopulation = accession.IsPopulation;
if (accession.Id <= 0)
{
genotype.Family = u_repo.GetFamily(genotype.FamilyId);
}
if (accession.IsBase)
{
genotype.Year = accession.FamilyBaseGenotypeYear;
genotype.Note = accession.FamilyBaseGenotypeNote;
genotype.IsRoot = true;
}
if (genotype.GivenName != oldGivenName && !oldGivenName.IsNullOrWhiteSpace())
{
genotype.Alias2 = genotype.Alias1;
genotype.Alias1 = oldGivenName;
}
// update family information
if (accession.IsBase)
{
Family oldFamily = u_repo.GetFamily(accession.FamilyId);
// check origin name and cross number
Family family = accession.ToFamily();
if (family.CrossTypeId.HasValue)
{
family.CrossType = u_repo.GetCrossType(accession.FamilyCrossTypeId.Value);
}
if (family.OriginId.HasValue)
{
family.Origin = u_repo.GetOrigin(accession.FamilyOriginId.Value);
}
if (oldFamily.OriginalName != family.OriginalName && !oldFamily.OriginalName.IsNullOrWhiteSpace())
{
genotype.Alias2 = genotype.Alias1;
genotype.Alias1 = oldOriginalName;
u_repo.UpdateGeotypesAlias(family.Id, oldOriginalName);
}
family.BaseGenotype = oldFamily.BaseGenotype;
family.BaseGenotypeId = oldFamily.BaseGenotypeId;
family.Genus = oldFamily.Genus;
family.Genotypes = oldFamily.Genotypes;
if (family.FemaleParent.HasValue)
{
family.FemaleGenotype = u_repo.GetGenotype(family.FemaleParent.Value);
}
if (family.MaleParent.HasValue)
{
family.MaleGenotype = u_repo.GetGenotype(family.MaleParent.Value);
}
if (family.OriginId.HasValue)
{
family.Origin = u_repo.GetOrigin(family.OriginId.Value);
}
u_repo.SaveFamily(family);
}
u_repo.SaveGenotype(genotype);
if (genotype.CrossPlanId.HasValue)
{
UpdateCrossPlanFromAccession(genotype);
}
}