public override void Save(IContainer entityToSerialize)
{
var fileName = _interactionTask.AskForFileToSave(AppConstants.Captions.Save, Constants.Filter.PKML_FILE_FILTER, Constants.DirectoryKey.MODEL_PART, entityToSerialize.Name);
if (fileName.IsNullOrEmpty())
{
return;
}
var tmpSpatialStructure = (IMoBiSpatialStructure)_spatialStructureFactory.Create();
// make a backup of the parent and reset that after as there is a side effect
// of removing the reference to parent container.
var parent = entityToSerialize.ParentContainer;
tmpSpatialStructure.AddTopContainer(entityToSerialize);
entityToSerialize.ParentContainer = parent;
var existingSpatialStructure = _interactionTaskContext.Active <IMoBiSpatialStructure>();
if (existingSpatialStructure != null)
{
var neighborhoods = getConnectingNeighborhoods(new[] { entityToSerialize }, existingSpatialStructure);
neighborhoods.Each(tmpSpatialStructure.AddNeighborhood);
if (existingSpatialStructure.DiagramModel != null)
{
tmpSpatialStructure.DiagramModel = existingSpatialStructure.DiagramModel.CreateCopy(entityToSerialize.Id);
}
}
_interactionTask.Save(tmpSpatialStructure, fileName);
}
/// <summary>
/// Creates the Spatial Structure of the SBML Model with the TopContainer.
/// </summary>
internal void CreateSpatialStructureFromModel(IContainer topContainer, Model model)
{
SpatialStructure = _spatialStructureFactory.Create().DowncastTo <IMoBiSpatialStructure>()
.WithName(SBMLConstants.SBML_MODEL + model.getName())
.WithTopContainer(topContainer)
.WithDescription(SBMLConstants.SBML_NOTES + model.getNotesString() + SBMLConstants.SPACE +
SBMLConstants.SBML_METAID + model.getMetaId());
SpatialStructure.AddTopContainer(_eventsTopContainer);
}
