public virtual void Analyze()
{
if (product == null)
{
return;
}
product.MaxScore();
ISpectrum spectrum = product.GetSpectrum();
HashSet <string> seen = new HashSet <string>();
foreach (IGlycoPeptideScore g in product.GetResults())
{
// remove redudant
string structure = string.Join("_", g.GetGlycoPeptide().GetGlycan().GetStructure());
string seq = g.GetGlycoPeptide().GetPeptide().GetSequence();
if (!seen.Contains(structure + seq))
{
seen.Add(structure + seq);
}
else
{
continue;
}
writer.Write(spectrum.GetScanNum().ToString() + ", ");
writer.Write(seq + ", ");
writer.Write(structure + ", ");
writer.Write(g.GetScore().ToString() + ", ");
writer.Write((spectrum as ISpectrumMSn).GetParentMZ().ToString() + ", ");
writer.WriteLine((spectrum as ISpectrumMSn).GetParentCharge().ToString());
}
}
