public async Task Invoke(HttpContext context, IFhirRequestContextAccessor fhirRequestContextAccessor, CorrelationIdProvider correlationIdProvider)
{
HttpRequest request = context.Request;
string baseUriInString = UriHelper.BuildAbsolute(
request.Scheme,
request.Host,
request.PathBase);
string uriInString = UriHelper.BuildAbsolute(
request.Scheme,
request.Host,
request.PathBase,
request.Path,
request.QueryString);
string correlationId = correlationIdProvider.Invoke();
var fhirRequestContext = new FhirRequestContext(
method: request.Method,
uriString: uriInString,
baseUriString: baseUriInString,
correlationId: correlationId,
requestHeaders: context.Request.Headers,
responseHeaders: context.Response.Headers);
context.Response.Headers[RequestIdHeaderName] = correlationId;
fhirRequestContextAccessor.FhirRequestContext = fhirRequestContext;
// Call the next delegate/middleware in the pipeline
await _next(context);
}
/// <summary>
/// Initializes a new instance of the <see cref="ResourceWrapperFactory"/> class.
/// </summary>
/// <param name="rawResourceFactory">The raw resource factory.</param>
/// <param name="fhirRequestContextAccessor">The FHIR request context accessor.</param>
/// <param name="searchIndexer">The search indexer used to generate search indices.</param>
/// <param name="claimsExtractor">The claims extractor used to extract claims.</param>
/// <param name="compartmentIndexer">The compartment indexer.</param>
/// <param name="searchParameterDefinitionManager"> The search parameter definition manager.</param>
/// <param name="resourceDeserializer">Resource deserializer</param>
public ResourceWrapperFactory(
IRawResourceFactory rawResourceFactory,
IFhirRequestContextAccessor fhirRequestContextAccessor,
ISearchIndexer searchIndexer,
IClaimsExtractor claimsExtractor,
ICompartmentIndexer compartmentIndexer,
ISearchParameterDefinitionManager searchParameterDefinitionManager,
IResourceDeserializer resourceDeserializer)
{
EnsureArg.IsNotNull(rawResourceFactory, nameof(rawResourceFactory));
EnsureArg.IsNotNull(searchIndexer, nameof(searchIndexer));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(claimsExtractor, nameof(claimsExtractor));
EnsureArg.IsNotNull(compartmentIndexer, nameof(compartmentIndexer));
EnsureArg.IsNotNull(searchParameterDefinitionManager, nameof(searchParameterDefinitionManager));
EnsureArg.IsNotNull(resourceDeserializer, nameof(resourceDeserializer));
_rawResourceFactory = rawResourceFactory;
_searchIndexer = searchIndexer;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_claimsExtractor = claimsExtractor;
_compartmentIndexer = compartmentIndexer;
_searchParameterDefinitionManager = searchParameterDefinitionManager;
_resourceDeserializer = resourceDeserializer;
}
public static IFhirRequestContextAccessor SetupAccessor(this IFhirRequestContext context)
{
IFhirRequestContextAccessor accessor = Substitute.For <IFhirRequestContextAccessor>();
accessor.FhirRequestContext.Returns(context);
return(accessor);
}
public SqlServerSearchService(
ISearchOptionsFactory searchOptionsFactory,
IFhirDataStore fhirDataStore,
SqlServerFhirModel model,
SqlRootExpressionRewriter sqlRootExpressionRewriter,
ChainFlatteningRewriter chainFlatteningRewriter,
SortRewriter sortRewriter,
SqlConnectionWrapperFactory sqlConnectionWrapperFactory,
SchemaInformation schemaInformation,
ISortingValidator sortingValidator,
IFhirRequestContextAccessor requestContextAccessor,
ILogger <SqlServerSearchService> logger)
: base(searchOptionsFactory, fhirDataStore)
{
EnsureArg.IsNotNull(sqlRootExpressionRewriter, nameof(sqlRootExpressionRewriter));
EnsureArg.IsNotNull(chainFlatteningRewriter, nameof(chainFlatteningRewriter));
EnsureArg.IsNotNull(sqlConnectionWrapperFactory, nameof(sqlConnectionWrapperFactory));
EnsureArg.IsNotNull(schemaInformation, nameof(schemaInformation));
EnsureArg.IsNotNull(sortingValidator, nameof(sortingValidator));
EnsureArg.IsNotNull(requestContextAccessor, nameof(requestContextAccessor));
EnsureArg.IsNotNull(logger, nameof(logger));
_model = model;
_sqlRootExpressionRewriter = sqlRootExpressionRewriter;
_sortRewriter = sortRewriter;
_chainFlatteningRewriter = chainFlatteningRewriter;
_sqlConnectionWrapperFactory = sqlConnectionWrapperFactory;
_logger = logger;
_schemaInformation = schemaInformation;
_sortingValidator = sortingValidator;
_requestContextAccessor = requestContextAccessor;
}
/// <summary>
/// Initializes a new instance of the <see cref="FhirDataStore"/> class.
/// </summary>
/// <param name="documentClient">
/// A function that returns an <see cref="IDocumentClient"/>.
/// Note that this is a function so that the lifetime of the instance is not directly controlled by the IoC container.
/// </param>
/// <param name="cosmosDataStoreConfiguration">The data store configuration</param>
/// <param name="cosmosDocumentQueryFactory">The factory used to create the document query.</param>
/// <param name="retryExceptionPolicyFactory">The retry exception policy factory.</param>
/// <param name="fhirRequestContextAccessor">The fhir request context accessor.</param>
/// <param name="namedCosmosCollectionConfigurationAccessor">The IOptions accessor to get a named version.</param>
/// <param name="logger">The logger instance.</param>
public FhirDataStore(
IScoped <IDocumentClient> documentClient,
CosmosDataStoreConfiguration cosmosDataStoreConfiguration,
FhirCosmosDocumentQueryFactory cosmosDocumentQueryFactory,
RetryExceptionPolicyFactory retryExceptionPolicyFactory,
IFhirRequestContextAccessor fhirRequestContextAccessor,
IOptionsMonitor <CosmosCollectionConfiguration> namedCosmosCollectionConfigurationAccessor,
ILogger <FhirDataStore> logger)
{
EnsureArg.IsNotNull(documentClient, nameof(documentClient));
EnsureArg.IsNotNull(cosmosDataStoreConfiguration, nameof(cosmosDataStoreConfiguration));
EnsureArg.IsNotNull(cosmosDocumentQueryFactory, nameof(cosmosDocumentQueryFactory));
EnsureArg.IsNotNull(retryExceptionPolicyFactory, nameof(retryExceptionPolicyFactory));
EnsureArg.IsNotNull(namedCosmosCollectionConfigurationAccessor, nameof(namedCosmosCollectionConfigurationAccessor));
EnsureArg.IsNotNull(logger, nameof(logger));
_collectionConfiguration = namedCosmosCollectionConfigurationAccessor.Get(Constants.CollectionConfigurationName);
_cosmosDocumentQueryFactory = cosmosDocumentQueryFactory;
_retryExceptionPolicyFactory = retryExceptionPolicyFactory;
_logger = logger;
_documentClient = new FhirDocumentClient(documentClient.Value, fhirRequestContextAccessor, cosmosDataStoreConfiguration.ContinuationTokenSizeLimitInKb);
_cosmosDataStoreConfiguration = cosmosDataStoreConfiguration;
_collectionUri = cosmosDataStoreConfiguration.GetRelativeCollectionUri(_collectionConfiguration.CollectionId);
_upsertWithHistoryProc = new UpsertWithHistory();
_hardDelete = new HardDelete();
}
public FhirDocumentClient(IDocumentClient inner, IFhirRequestContextAccessor fhirRequestContextAccessor, int?continuationTokenSizeLimitInKb)
: this(inner)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_continuationTokenSizeLimitInKb = continuationTokenSizeLimitInKb;
}
public ReindexJobTask(
Func <IScoped <IFhirOperationDataStore> > fhirOperationDataStoreFactory,
Func <IScoped <IFhirDataStore> > fhirDataStoreFactory,
IOptions <ReindexJobConfiguration> reindexJobConfiguration,
Func <IScoped <ISearchService> > searchServiceFactory,
ISupportedSearchParameterDefinitionManager supportedSearchParameterDefinitionManager,
IReindexUtilities reindexUtilities,
IFhirRequestContextAccessor fhirRequestContextAccessor,
IReindexJobThrottleController throttleController,
IModelInfoProvider modelInfoProvider,
ILogger <ReindexJobTask> logger)
{
EnsureArg.IsNotNull(fhirOperationDataStoreFactory, nameof(fhirOperationDataStoreFactory));
EnsureArg.IsNotNull(fhirDataStoreFactory, nameof(fhirDataStoreFactory));
EnsureArg.IsNotNull(reindexJobConfiguration?.Value, nameof(reindexJobConfiguration));
EnsureArg.IsNotNull(searchServiceFactory, nameof(searchServiceFactory));
EnsureArg.IsNotNull(supportedSearchParameterDefinitionManager, nameof(supportedSearchParameterDefinitionManager));
EnsureArg.IsNotNull(reindexUtilities, nameof(reindexUtilities));
EnsureArg.IsNotNull(throttleController, nameof(throttleController));
EnsureArg.IsNotNull(modelInfoProvider, nameof(modelInfoProvider));
EnsureArg.IsNotNull(logger, nameof(logger));
_fhirOperationDataStoreFactory = fhirOperationDataStoreFactory;
_fhirDataStoreFactory = fhirDataStoreFactory;
_reindexJobConfiguration = reindexJobConfiguration.Value;
_searchServiceFactory = searchServiceFactory;
_supportedSearchParameterDefinitionManager = supportedSearchParameterDefinitionManager;
_reindexUtilities = reindexUtilities;
_contextAccessor = fhirRequestContextAccessor;
_throttleController = throttleController;
_modelInfoProvider = modelInfoProvider;
_logger = logger;
}
public BundleHandlerTests()
{
_router = Substitute.For <IRouter>();
var fhirRequestContext = new DefaultFhirRequestContext
{
BaseUri = new Uri("https://localhost/"),
CorrelationId = Guid.NewGuid().ToString(),
};
_fhirRequestContextAccessor = Substitute.For <IFhirRequestContextAccessor>();
_fhirRequestContextAccessor.FhirRequestContext.Returns(fhirRequestContext);
_httpContextAccessor = Substitute.For <IHttpContextAccessor>();
_fhirJsonSerializer = new FhirJsonSerializer();
_fhirJsonParser = new FhirJsonParser();
_searchService = Substitute.For <ISearchService>();
var fhirDataStore = Substitute.For <IFhirDataStore>();
var conformanceProvider = Substitute.For <Lazy <IConformanceProvider> >();
var resourceWrapperFactory = Substitute.For <IResourceWrapperFactory>();
var resourceIdProvider = Substitute.For <ResourceIdProvider>();
var transactionBundleValidator = new TransactionBundleValidator(fhirDataStore, conformanceProvider, resourceWrapperFactory, _searchService, resourceIdProvider);
_bundleHttpContextAccessor = new BundleHttpContextAccessor();
IFeatureCollection featureCollection = CreateFeatureCollection();
var httpContext = new DefaultHttpContext(featureCollection)
{
Request =
{
Scheme = "https",
Host = new HostString("localhost"),
PathBase = new PathString("/"),
},
};
_httpContextAccessor.HttpContext.Returns(httpContext);
var transactionHandler = Substitute.For <ITransactionHandler>();
_resourceIdProvider = new ResourceIdProvider();
_auditEventTypeMapping = Substitute.For <IAuditEventTypeMapping>();
_bundleHandler = new BundleHandler(
_httpContextAccessor,
_fhirRequestContextAccessor,
_fhirJsonSerializer,
_fhirJsonParser,
transactionHandler,
_bundleHttpContextAccessor,
_resourceIdProvider,
transactionBundleValidator,
_auditEventTypeMapping,
NullLogger <BundleHandler> .Instance);
}
public SearchableSearchParameterDefinitionManager(SearchParameterDefinitionManager inner, IFhirRequestContextAccessor fhirRequestContextAccessor)
{
EnsureArg.IsNotNull(inner, nameof(inner));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
_inner = inner;
_fhirReqeustContextAccessor = fhirRequestContextAccessor;
}
public BundleFactory(IUrlResolver urlResolver, IFhirRequestContextAccessor fhirRequestContextAccessor)
{
EnsureArg.IsNotNull(urlResolver, nameof(urlResolver));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
_urlResolver = urlResolver;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
}
public PrincipalClaimsExtractor(IFhirRequestContextAccessor fhirRequestContextAccessor, IOptions <SecurityConfiguration> securityConfiguration)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(securityConfiguration, nameof(securityConfiguration));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_securityConfiguration = securityConfiguration.Value;
}
/// <summary>
/// Initializes a new instance of the <see cref="FhirCosmosDocumentQueryFactory"/> class.
/// </summary>
/// <param name="fhirRequestContextAccessor">The request context accessor</param>
/// <param name="logger">The logger.</param>
public FhirCosmosDocumentQueryFactory(IFhirRequestContextAccessor fhirRequestContextAccessor, IFhirDocumentQueryLogger logger)
{
EnsureArg.IsNotNull(logger, nameof(logger));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
_logger = logger;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
}
public DocumentClientWithConsistencyLevelFromContextTests()
{
_innerClient = Substitute.For <IDocumentClient>();
_fhirRequestContextAccessor = Substitute.For <IFhirRequestContextAccessor>();
_fhirRequestContextAccessor.FhirRequestContext.RequestHeaders.Returns(_requestHeaders);
_fhirRequestContextAccessor.FhirRequestContext.ResponseHeaders.Returns(_responseHeaders);
_consistentClient = new DocumentClientWithConsistencyLevelFromContext(_innerClient, _fhirRequestContextAccessor);
}
public FhirDocumentClientTests()
{
_innerClient = Substitute.For <IDocumentClient>();
_fhirRequestContextAccessor = Substitute.For <IFhirRequestContextAccessor>();
_fhirRequestContextAccessor.FhirRequestContext.RequestHeaders.Returns(_requestHeaders);
_fhirRequestContextAccessor.FhirRequestContext.ResponseHeaders.Returns(_responseHeaders);
_fhirClient = new FhirDocumentClient(_innerClient, _fhirRequestContextAccessor, null);
}
public RoleBasedFhirAuthorizationService(AuthorizationConfiguration authorizationConfiguration, IFhirRequestContextAccessor requestContextAccessor)
{
EnsureArg.IsNotNull(authorizationConfiguration, nameof(authorizationConfiguration));
EnsureArg.IsNotNull(requestContextAccessor, nameof(requestContextAccessor));
_requestContextAccessor = requestContextAccessor;
_rolesClaimName = authorizationConfiguration.RolesClaim;
_roles = authorizationConfiguration.Roles.ToDictionary(r => r.Name, StringComparer.OrdinalIgnoreCase);
}
public FhirDocumentClientInitializer(IDocumentClientTestProvider testProvider, IFhirRequestContextAccessor fhirRequestContextAccessor, ILogger <FhirDocumentClientInitializer> logger)
{
EnsureArg.IsNotNull(logger, nameof(logger));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(testProvider, nameof(testProvider));
_testProvider = testProvider;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_logger = logger;
}
public FhirRequestContextRouteDataPopulatingFilterAttribute(
IFhirRequestContextAccessor fhirRequestContextAccessor,
IAuditEventTypeMapping auditEventTypeMapping)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(auditEventTypeMapping, nameof(auditEventTypeMapping));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_auditEventTypeMapping = auditEventTypeMapping;
}
public CosmosResponseProcessor(IFhirRequestContextAccessor fhirRequestContextAccessor, IMediator mediator, ILogger <CosmosResponseProcessor> logger)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(mediator, nameof(mediator));
EnsureArg.IsNotNull(logger, nameof(logger));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_mediator = mediator;
_logger = logger;
}
public SmartOnFhirAuditLoggingFilterAttribute(string action, IAuditLogger auditLogger, IFhirRequestContextAccessor fhirRequestContextAccessor)
{
EnsureArg.IsNotNullOrWhiteSpace(action, nameof(action));
EnsureArg.IsNotNull(auditLogger, nameof(auditLogger));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
_action = action;
_auditLogger = auditLogger;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
}
public ReindexJobCosmosThrottleController(
IFhirRequestContextAccessor fhirRequestContextAccessor,
ILogger <ReindexJobCosmosThrottleController> logger)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(logger, nameof(logger));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_logger = logger;
}
public FhirCosmosResponseHandler(
Func <IScoped <Container> > client,
CosmosDataStoreConfiguration cosmosDataStoreConfiguration,
IFhirRequestContextAccessor fhirRequestContextAccessor,
ICosmosResponseProcessor cosmosResponseProcessor)
{
_client = client;
_cosmosDataStoreConfiguration = cosmosDataStoreConfiguration;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_cosmosResponseProcessor = cosmosResponseProcessor;
}
public async Task Invoke(HttpContext context, IFhirRequestContextAccessor fhirRequestContextAccessor)
{
// Now the authentication is completed successfully, sets the user.
if (context.User != null)
{
fhirRequestContextAccessor.FhirRequestContext.Principal = context.User;
}
// Call the next delegate/middleware in the pipeline
await _next(context);
}
public Task Invoke(HttpContext context, IFhirRequestContextAccessor fhirRequestContextAccessor)
{
// Set the user again to pick up anything that was set during authentication, e.g. claims.
if (context.User != null)
{
fhirRequestContextAccessor.FhirRequestContext.Principal = context.User;
}
// Call the next delegate/middleware in the pipeline
return(_next(context));
}
public ExportController(
IFhirRequestContextAccessor fhirRequestContextAccessor,
IOptions<OperationsConfiguration> operationsConfig,
ILogger<ExportController> logger)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(operationsConfig?.Value?.Export, nameof(operationsConfig));
EnsureArg.IsNotNull(logger, nameof(logger));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_exportConfig = operationsConfig.Value.Export;
_logger = logger;
}
public AuditHelper(
IFhirRequestContextAccessor fhirRequestContextAccessor,
IAuditLogger auditLogger,
IAuditHeaderReader auditHeaderReader)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(auditLogger, nameof(auditLogger));
EnsureArg.IsNotNull(auditHeaderReader, nameof(auditHeaderReader));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_auditLogger = auditLogger;
_auditHeaderReader = auditHeaderReader;
}
public AuditMiddleware(
RequestDelegate next,
IFhirRequestContextAccessor fhirRequestContextAccessor,
IAuditHelper auditHelper)
{
EnsureArg.IsNotNull(next, nameof(next));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(auditHelper, nameof(auditHelper));
_next = next;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_auditHelper = auditHelper;
}
public FhirRequestContextBeforeAuthenticationMiddleware(
RequestDelegate next,
IFhirRequestContextAccessor fhirRequestContextAccessor,
IAuditEventTypeMapping auditEventTypeMapping)
{
EnsureArg.IsNotNull(next, nameof(next));
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(auditEventTypeMapping, nameof(auditEventTypeMapping));
_next = next;
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_auditEventTypeMapping = auditEventTypeMapping;
}
public FhirDocumentClientTests()
{
_innerClient = Substitute.For <IDocumentClient>();
_fhirRequestContextAccessor = Substitute.For <IFhirRequestContextAccessor>();
_fhirRequestContextAccessor.FhirRequestContext.RequestHeaders.Returns(_requestHeaders);
_fhirRequestContextAccessor.FhirRequestContext.ResponseHeaders.Returns(_responseHeaders);
var cosmosStorageMetrics = new CosmosStorageRequestMetrics("test operation", "test resource");
_fhirRequestContextAccessor.FhirRequestContext.StorageRequestMetrics.Returns(cosmosStorageMetrics);
_fhirClient = new FhirDocumentClient(_innerClient, _fhirRequestContextAccessor, null);
}
public ApiNotificationMiddleware(
IFhirRequestContextAccessor fhirRequestContextAccessor,
IMediator mediator,
ILogger <ApiNotificationMiddleware> logger)
{
EnsureArg.IsNotNull(fhirRequestContextAccessor, nameof(fhirRequestContextAccessor));
EnsureArg.IsNotNull(mediator, nameof(mediator));
EnsureArg.IsNotNull(logger, nameof(logger));
_fhirRequestContextAccessor = fhirRequestContextAccessor;
_mediator = mediator;
_logger = logger;
}
public CosmosResponseProcessorTests()
{
_fhirRequestContextAccessor = Substitute.For <IFhirRequestContextAccessor>();
_fhirRequestContextAccessor.FhirRequestContext.RequestHeaders.Returns(_requestHeaders);
_fhirRequestContextAccessor.FhirRequestContext.ResponseHeaders.Returns(_responseHeaders);
_fhirRequestContextAccessor.FhirRequestContext.ResourceType.Returns("resource");
_fhirRequestContextAccessor.FhirRequestContext.AuditEventType.Returns("operation");
_mediator = Substitute.For <IMediator>();
var nullLogger = NullLogger <CosmosResponseProcessor> .Instance;
_cosmosResponseProcessor = new CosmosResponseProcessor(_fhirRequestContextAccessor, _mediator, nullLogger);
}
