public void Write(IExtendedBinaryWriter writer)
{
writer.Write(DataSource);
writer.Write(IsArray);
writer.WriteOpt(JsonStrings.Length);
foreach (var jsonString in JsonStrings)
{
writer.Write(jsonString);
}
}
public void Write(IExtendedBinaryWriter writer)
{
writer.WriteOptAscii(Id);
writer.WriteOptAscii(AnnotationType);
writer.WriteOptAscii(SaAltAllele);
writer.Write(IsPositional);
if (StringFields != null)
{
writer.WriteOpt(StringFields.Count);
foreach (var stringField in StringFields)
{
writer.WriteOptAscii(stringField.Key);
writer.WriteOptAscii(stringField.Value);
}
}
else
{
writer.WriteOpt(0);
}
if (BooleanFields != null)
{
writer.WriteOpt(BooleanFields.Count);
foreach (var booleanField in BooleanFields)
{
writer.WriteOptAscii(booleanField);
}
}
else
{
writer.WriteOpt(0);
}
}
public void Write(IExtendedBinaryWriter writer)
{
writer.WriteOpt(Chromosome.Index);
writer.WriteOpt(Start);
writer.WriteOpt(End);
writer.Write((byte)Type);
// ReSharper disable once ImpureMethodCallOnReadonlyValueField
Id.Write(writer);
}
public void Write(IExtendedBinaryWriter writer)
{
writer.Write((byte)Type);
writer.WriteOpt(Id);
writer.WriteOpt(Start);
writer.WriteOpt(End);
writer.WriteOpt(CdnaStart);
writer.WriteOpt(CdnaEnd);
}
public void Write(IExtendedBinaryWriter writer)
{
writer.Write(GeneName);
writer.WriteOpt(Annotations.Length);
for (int i = 0; i < Annotations.Length; i++)
{
Annotations[i].Write(writer);
}
}
public void Write(IExtendedBinaryWriter writer)
{
writer.WriteOpt(Chromosome.Index);
writer.WriteOpt(Start);
writer.WriteOpt(End);
writer.Write(OnReverseStrand);
writer.WriteOptAscii(Symbol);
writer.WriteOpt(HgncId);
// ReSharper disable ImpureMethodCallOnReadonlyValueField
EntrezGeneId.Write(writer);
EnsemblId.Write(writer);
}
public void Write(IExtendedBinaryWriter writer)
{
writer.Write(KeyName);
writer.Write(VcfkeyName);
writer.Write(AltAllele);
byte flags = 0;
if (MatchByAllele)
{
flags |= 1;
}
if (IsArray)
{
flags |= 2;
}
writer.Write(flags);
writer.Write(VcfString);
writer.WriteOpt(JsonStrings.Length);
foreach (var jsonString in JsonStrings)
{
writer.Write(jsonString);
}
}
internal static void WriteItems <T>(IExtendedBinaryWriter writer, IReadOnlyCollection <T> items, Action <T> writeMethod)
{
if (items == null)
{
writer.WriteOpt(0);
}
else
{
writer.WriteOpt(items.Count);
foreach (var item in items)
{
writeMethod(item);
}
}
writer.Write(CacheConstants.GuardInt);
}
private static void WriteIntervals <T>(IExtendedBinaryWriter writer, IReadOnlyCollection <IntervalArray <T> > intervalArrays,
Action <T> writeMethod)
{
writer.WriteOpt(intervalArrays.Count);
foreach (var intervalArray in intervalArrays)
{
if (intervalArray == null)
{
writer.WriteOpt(0);
continue;
}
writer.WriteOpt(intervalArray.Array.Length);
foreach (var interval in intervalArray.Array)
{
writeMethod(interval.Value);
}
}
writer.Write(CacheConstants.GuardInt);
}
internal void Write(IExtendedBinaryWriter writer)
{
writer.Write(_info);
writer.Write(_contents);
}
public void Write(IExtendedBinaryWriter writer)
{
writer.Write((byte)_id);
writer.Write(_version);
writer.Write(_info);
}
private void WriteBuffer(IExtendedBinaryWriter writer)
{
writer.WriteOpt(_buffer.Length);
writer.Write(_buffer);
}