public PopulationAnalysisOutputSelectionPresenter(
IPopulationAnalysisOutputSelectionView view,
IQuantityListPresenter allOutputsPresenter,
IPopulationAnalysisOutputFieldsPresenter selectedOutputsPresenter,
IPopulationAnalysisStatisticsSelectionPresenter statisticsSelectionPresenter,
IEntitiesInContainerRetriever outputsRetriever,
IEventPublisher eventPublisher,
IDimensionRepository dimensionRepository,
IQuantityPathToQuantityDisplayPathMapper quantityDisplayPathMapper) : base(view)
{
_allOutputsPresenter = allOutputsPresenter;
_selectedOutputsPresenter = selectedOutputsPresenter;
_statisticsSelectionPresenter = statisticsSelectionPresenter;
_outputsRetriever = outputsRetriever;
_eventPublisher = eventPublisher;
_quantityDisplayPathMapper = quantityDisplayPathMapper;
_timeDimension = dimensionRepository.Time;
AddSubPresenters(allOutputsPresenter, _selectedOutputsPresenter, _statisticsSelectionPresenter);
_view.AddPopulationOutputsView(_allOutputsPresenter.View);
_view.AddSelectedOutputsView(_selectedOutputsPresenter.View);
_view.AddStatisticsSelectionView(_statisticsSelectionPresenter.View);
_allOutputsPresenter.QuantityDoubleClicked += (o, e) => addOutput(e.Quantity);
_allOutputsPresenter.Hide(QuantityColumn.Selection);
_statisticsSelectionPresenter.SelectionChanged += (o, e) => selectionChanged();
_allOutputsPresenter.ExpandAllGroups = true;
}
protected override void Context()
{
_view = A.Fake <IPopulationAnalysisFieldsView>();
_quantitiesRetriever = A.Fake <IEntitiesInContainerRetriever>();
_contextMenuFactory = A.Fake <IPopulationAnalysesContextMenuFactory>();
_populationAnalysisFieldFactory = A.Fake <IPopulationAnalysisFieldFactory>();
_populationAnalysisTemplateTask = A.Fake <IPopulationAnalysisTemplateTask>();
_dialogCreator = A.Fake <IDialogCreator>();
_fieldDTOMapper = A.Fake <IPopulationAnalysisFieldToPopulationAnalysisFieldDTOMapper>();
_parameterCache = new PathCacheForSpecs <IParameter>();
_eventPublisher = A.Fake <IEventPublisher>();
_populationAnalysisGroupingFieldCreator = A.Fake <IPopulationAnalysisGroupingFieldCreator>();
sut = new PopulationAnalysisParameterFieldsPresenter(_view, _contextMenuFactory, _quantitiesRetriever, _populationAnalysisFieldFactory,
_eventPublisher, _populationAnalysisGroupingFieldCreator, _populationAnalysisTemplateTask, _dialogCreator, _fieldDTOMapper);
A.CallTo(_quantitiesRetriever).WithReturnType <PathCache <IParameter> >().Returns(_parameterCache);
_populationPivotAnalysis = new PopulationPivotAnalysis();
_populationDataCollector = A.Fake <IPopulationDataCollector>();
sut.StartAnalysis(_populationDataCollector, _populationPivotAnalysis);
_parameter = A.Fake <IParameter>();
_parameterField = new PopulationAnalysisParameterField {
ParameterPath = _parameterPath, Name = "ParameterField"
};
A.CallTo(() => _populationAnalysisFieldFactory.CreateFor(_parameter)).Returns(_parameterField);
_derivedField = A.Fake <PopulationAnalysisDerivedField>();
A.CallTo(() => _derivedField.ReferencedFieldNames).Returns(new[] { _parameterField.Name });
_parameterCache.Add(_parameterPath, _parameter);
}
protected override void Context()
{
_quantityRetriever = A.Fake <IEntitiesInContainerRetriever>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_displayUnitRetriever = A.Fake <IDisplayUnitRetriever>();
sut = new SimulationResultsToDataTableConverter(_dimensionRepository, _quantityRetriever, _displayUnitRetriever);
}
public PopulationAnalysisAvailablePKParametersPresenter(IPopulationAnalysisAvailablePKParametersView view,
IQuantityToQuantitySelectionDTOMapper quantitySelectionDTOMapper, IEntitiesInContainerRetriever entitiesInContainerRetriever, IPKParameterRepository pkParameterRepository)
: base(view)
{
_quantitySelectionDTOMapper = quantitySelectionDTOMapper;
_entitiesInContainerRetriever = entitiesInContainerRetriever;
_pkParameterRepository = pkParameterRepository;
_allPKParameters = new List <QuantityPKParameterDTO>();
}
public JsonSimulationRunner(ISimulationLoader simulationLoader, ISimulationExporter simulationExporter, IBatchLogger logger,
IEntitiesInContainerRetriever entitiesInContainerRetriever, IExecutionContext executionContext, ICommandTask commandTask)
{
_simulationLoader = simulationLoader;
_simulationExporter = simulationExporter;
_logger = logger;
_entitiesInContainerRetriever = entitiesInContainerRetriever;
_executionContext = executionContext;
_commandTask = commandTask;
}
protected override void Context()
{
_view = A.Fake <IPopulationAnalysisOutputSelectionView>();
_allOutputsPresenter = A.Fake <IQuantityListPresenter>();
_selectedOutputsPresenter = A.Fake <IPopulationAnalysisOutputFieldsPresenter>();
_statisticSelectionPresenter = A.Fake <IPopulationAnalysisStatisticsSelectionPresenter>();
_outputsRetriever = A.Fake <IEntitiesInContainerRetriever>();
_eventPublisher = A.Fake <IEventPublisher>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_timeDimension = A.Fake <IDimension>();
A.CallTo(() => _dimensionRepository.Time).Returns(_timeDimension);
sut = new PopulationAnalysisOutputSelectionPresenter(_view, _allOutputsPresenter, _selectedOutputsPresenter, _statisticSelectionPresenter, _outputsRetriever, _eventPublisher, _dimensionRepository);
}
protected override void Context()
{
_token = new CancellationToken();
_populationSimulation = A.Fake <PopulationSimulation>();
_pkAnalyses = A.Fake <PopulationSimulationPKAnalyses>();
_populationSimulation.PKAnalyses = _pkAnalyses;
_quantityRetriever = A.Fake <IEntitiesInContainerRetriever>();
_pkAnalysesImporter = A.Fake <ISimulationPKAnalysesImporter>();
_availableQuantities = new PathCacheForSpecs <IQuantity>();
A.CallTo(_pkAnalysesImporter).WithReturnType <IEnumerable <QuantityPKParameter> >().Returns(_importedPKParameters);
A.CallTo(() => _quantityRetriever.OutputsFrom(_populationSimulation)).Returns(_availableQuantities);
sut = new SimulationPKParametersImportTask(_pkAnalysesImporter, _quantityRetriever);
}
protected override void Context()
{
_dialogCreator = A.Fake <IDialogCreator>();
_templateTask = A.Fake <ITemplateTask>();
_keyPathMapper = A.Fake <IKeyPathMapper>();
_entitiesInContainerRetriever = A.Fake <IEntitiesInContainerRetriever>();
_entityTask = A.Fake <IEntityTask>();
_cloner = A.Fake <ICloner>();
_simulationAnalysisWorkflowMapper = A.Fake <IAnalysableToSimulationAnalysisWorkflowMapper>();
_simulationAnalysisCreator = A.Fake <ISimulationAnalysisCreator>();
_lazyLoadTask = A.Fake <ILazyLoadTask>();
sut = new PopulationAnalysisTemplateTask(_templateTask, _dialogCreator, _entitiesInContainerRetriever,
_keyPathMapper, _entityTask, _cloner, _simulationAnalysisWorkflowMapper, _simulationAnalysisCreator, _lazyLoadTask);
}
public ImportSimulationTask(ISimulationTransferLoader simulationTransferLoader, ISimulationFactory simulationFactory, IEntitiesInContainerRetriever parameterRetriever, ISimulationBuildingBlockUpdater simulationBuildingBlockUpdater,
IIndividualPropertiesCacheImporter individualPropertiesCacheImporter, IExecutionContext executionContext, IObjectBaseFactory objectBaseFactory,
ISimulationUpdaterAfterDeserialization simulationUpdaterAfterDeserialization, IAdvancedParameterFactory advancedParameterFactory)
{
_simulationTransferLoader = simulationTransferLoader;
_simulationFactory = simulationFactory;
_parameterRetriever = parameterRetriever;
_simulationBuildingBlockUpdater = simulationBuildingBlockUpdater;
_individualPropertiesCacheImporter = individualPropertiesCacheImporter;
_executionContext = executionContext;
_objectBaseFactory = objectBaseFactory;
_simulationUpdaterAfterDeserialization = simulationUpdaterAfterDeserialization;
_advancedParameterFactory = advancedParameterFactory;
}
protected override void Context()
{
_individualResultsImporter = A.Fake <IIndividualResultsImporter>();
_containerTask = A.Fake <IEntitiesInContainerRetriever>();
_progressManager = A.Fake <IProgressManager>();
_populationSimulation = A.Fake <PopulationSimulation>();
_files = new List <string> {
_file1, _file2
};
_cancellationToken = new CancellationToken();
sut = new SimulationResultsImportTask(_containerTask, _individualResultsImporter, _progressManager);
A.CallTo(_containerTask).WithReturnType <PathCache <IQuantity> >().Returns(_allQuantities);
A.CallTo(() => _individualResultsImporter.ImportFrom(_file1, _populationSimulation, A <IImportLogger> ._)).Returns(_individualResults1);
A.CallTo(() => _individualResultsImporter.ImportFrom(_file2, _populationSimulation, A <IImportLogger> ._)).Returns(_individualResults2);
}
protected override void Context()
{
_simulationTransferLoader = A.Fake <ISimulationTransferLoader>();
_simulationFactory = A.Fake <ISimulationFactory>();
_parameterRetriever = A.Fake <IEntitiesInContainerRetriever>();
_simulationBuildingBlockUpdater = A.Fake <ISimulationBuildingBlockUpdater>();
_executionContext = A.Fake <IExecutionContext>();
_individualPropertiesCacheImporter = A.Fake <IIndividualPropertiesCacheImporter>();
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_simulationUpdaterAfterDeserialization = A.Fake <ISimulationUpdaterAfterDeserialization>();
_advancedParameterFactory = A.Fake <IAdvancedParameterFactory>();
sut = new ImportSimulationTask(_simulationTransferLoader, _simulationFactory, _parameterRetriever,
_simulationBuildingBlockUpdater, _individualPropertiesCacheImporter, _executionContext, _objectBaseFactory,
_simulationUpdaterAfterDeserialization, _advancedParameterFactory);
}
protected override Task Context()
{
_entitiesInContainerRetriever = A.Fake <IEntitiesInContainerRetriever>();
_logger = A.Fake <ILogger>();
sut = new OutputSelectionsMapper(_entitiesInContainerRetriever, _logger);
_quantitySelection1 = new QuantitySelection("PATH1", QuantityType.Drug);
_quantitySelection2 = new QuantitySelection("PATH2", QuantityType.Observer);
_outputSelections = new OutputSelections();
_outputSelections.AddOutput(_quantitySelection1);
_outputSelections.AddOutput(_quantitySelection2);
_simulation = new IndividualSimulation();
_allQuantities = new PathCacheForSpecs <IQuantity>();
A.CallTo(() => _entitiesInContainerRetriever.QuantitiesFrom(_simulation)).Returns(_allQuantities);
return(Task.FromResult(true));
}
protected override void Context()
{
base.Context();
_context = A.Fake <IExecutionContext>();
_quantityRetriever = A.Fake <IEntitiesInContainerRetriever>();
_populationAnalysisTask = A.Fake <IPKAnalysesTask>();
_pkAnalyses = A.Fake <PopulationSimulationPKAnalyses>();
_quantityCache = new PathCacheForSpecs <IQuantity>();
_quantity1 = new MoleculeAmount();
_quantity2 = new MoleculeAmount();
_quantityCache.Add("PATH1", _quantity1);
_quantityCache.Add("PATH2", _quantity2);
A.CallTo(() => _context.Resolve <IEntitiesInContainerRetriever>()).Returns(_quantityRetriever);
A.CallTo(() => _context.Resolve <IPKAnalysesTask>()).Returns(_populationAnalysisTask);
A.CallTo(() => _quantityRetriever.QuantitiesFrom(_populationSimulation)).Returns(_quantityCache);
A.CallTo(() => _populationAnalysisTask.CalculateFor(_populationSimulation)).Returns(_pkAnalyses);
_allQuantityPaths = new List <string> {
"PATH1", "PATH2"
};
_simulationSettings = new OutputSelections();
A.CallTo(() => _populationSimulation.OutputSelections).Returns(_simulationSettings);
A.CallTo(() => _simulationResults.AllQuantityPaths()).Returns(_allQuantityPaths);
}
public SimulationResultsExportTask(IDimensionRepository dimensionRepository, IEntitiesInContainerRetriever quantityRetriever)
{
_quantityRetriever = quantityRetriever;
_timeDimension = dimensionRepository.Time;
}
public SimulationResultsToDataTableConverter(IDimensionRepository dimensionRepository, IEntitiesInContainerRetriever quantityRetriever, IDisplayUnitRetriever displayUnitRetriever)
{
_quantityRetriever = quantityRetriever;
_displayUnitRetriever = displayUnitRetriever;
_timeDimension = dimensionRepository.Time;
}
public SimulationPersistableUpdater(IEntitiesInContainerRetriever quantitiesRetriever) : base(quantitiesRetriever)
{
}
public PopulationAnalysisParameterFieldsPresenter(IPopulationAnalysisFieldsView view, IPopulationAnalysesContextMenuFactory contextMenuFactory, IEntitiesInContainerRetriever parametersRetriever, IPopulationAnalysisFieldFactory populationAnalysisFieldFactory, IEventPublisher eventPublisher, IPopulationAnalysisGroupingFieldCreator populationAnalysisGroupingFieldCreator, IPopulationAnalysisTemplateTask populationAnalysisTemplateTask, IDialogCreator dialogCreator, IPopulationAnalysisFieldToPopulationAnalysisFieldDTOMapper fieldDTOMapper)
: base(view, new[] { typeof(PopulationAnalysisParameterField), typeof(PopulationAnalysisCovariateField) }, contextMenuFactory, populationAnalysisFieldFactory, eventPublisher, populationAnalysisGroupingFieldCreator, populationAnalysisTemplateTask, dialogCreator, fieldDTOMapper)
{
_parametersRetriever = parametersRetriever;
EmptySelectionMessage = PKSimConstants.UI.ChooseParametersToDisplay;
}
public OutputSelectionsMapper(IEntitiesInContainerRetriever entitiesInContainerRetriever, IOSPSuiteLogger logger)
{
_entitiesInContainerRetriever = entitiesInContainerRetriever;
_logger = logger;
}
public SimulationPKParametersImportTask(ISimulationPKAnalysesImporter pkAnalysesImporter, IEntitiesInContainerRetriever quantityRetriever)
{
_pkAnalysesImporter = pkAnalysesImporter;
_quantityRetriever = quantityRetriever;
}
public SimulationResultsImportTask(IEntitiesInContainerRetriever quantitiesRetriever, IIndividualResultsImporter individualResultsImporter, IProgressManager progressManager)
{
_quantitiesRetriever = quantitiesRetriever;
_individualResultsImporter = individualResultsImporter;
_progressManager = progressManager;
}
protected override void Context()
{
_containerTask = A.Fake <IEntitiesInContainerRetriever>();
sut = new SimulationPersistableUpdater(_containerTask);
}
