protected override void Context()
{
_editObservedDataTask = A.Fake <IEditObservedDataTask>();
_view = A.Fake <IDataRepositoryDataView>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_commandCollector = A.Fake <ICommandCollector>();
sut = new DataRepositoryDataPresenter(_view, _dataRepositoryTask, _editObservedDataTask);
sut.InitializeWith(_commandCollector);
//common setup
_dataRepository = new DataRepository();
_dataTable = new DataTable();
A.CallTo(() => _dataRepositoryTask.ToDataTable(_dataRepository, A <DataColumnExportOptions> ._)).Returns(new[] { _dataTable });
var col = _dataTable.AddColumn <float>("test");
col.ExtendedProperties.Add(Constants.DATA_REPOSITORY_COLUMN_ID, "col");
_baseGrid = new BaseGrid("base", "base", Constants.Dimension.NO_DIMENSION)
{
Values = new ArraySegment <float>()
};
_dim = A.Fake <IDimension>();
_col = new DataColumn("col", "col", _dim, _baseGrid)
{
Values = new ArraySegment <float>()
};
_dataRepository.Add(_baseGrid);
_dataRepository.Add(_col);
}
public DataRepositoryTestPresenter(
IDataRepositoryTestView view,
IDataRepositoryDataPresenter dataPresenter,
IDataRepositoryChartPresenter chartPresenter,
IDataRepositoryMetaDataPresenter metaDataPresenter,
IImportObservedDataTask importObservedDataTask,
IDataRepositoryExportTask dataRepositoryTask,
IDialogCreator dialogCreator) : base(view)
{
_dataPresenter = dataPresenter;
_chartPresenter = chartPresenter;
_metaDataPresenter = metaDataPresenter;
_dataRepositoryTask = dataRepositoryTask;
_dialogCreator = dialogCreator;
_subPresenterManager.Add(_dataPresenter);
_subPresenterManager.Add(_chartPresenter);
_subPresenterManager.Add(_metaDataPresenter);
_view.AddChartView(_chartPresenter.BaseView);
_view.AddDataView(_dataPresenter.BaseView);
_view.AddMetaDataView(_metaDataPresenter.BaseView);
InitializeWith(new OSPSuiteMacroCommand <OSPSuiteExecutionContext>());
Edit(importObservedDataTask.ImportObservedData());
}
protected ObservedDataTask(IDialogCreator dialogCreator, IOSPSuiteExecutionContext executionContext, IDataRepositoryExportTask dataRepositoryExportTask, IContainerTask containerTask, IObjectTypeResolver objectTypeResolver)
{
_dialogCreator = dialogCreator;
_executionContext = executionContext;
_dataRepositoryExportTask = dataRepositoryExportTask;
_containerTask = containerTask;
_objectTypeResolver = objectTypeResolver;
}
public ObservedDataTeXBuilder(
IReportGenerator reportGenerator,
IDataRepositoryExportTask dataRepositoryTask,
ITeXBuilderRepository builderRepository)
{
_reportGenerator = reportGenerator;
_dataRepositoryTask = dataRepositoryTask;
_builderRepository = builderRepository;
}
protected override void Context()
{
base.Context();
_buildConfigurationFactory = IoC.Resolve <IBuildConfigurationFactory>();
_modelConstructor = IoC.Resolve <IModelConstructor>();
_simModelExporter = IoC.Resolve <ISimModelExporter>();
_dateRepositoryTask = IoC.Resolve <IDataRepositoryExportTask>();
_directory = Path.Combine(Path.Combine(Path.Combine(Path.Combine(Path.Combine(AppDomain.CurrentDomain.BaseDirectory, "..\\.."), "Core", "SBML", "Testfiles", "SBMLTestSuite"))));
}
public PopulationAnalysisTask(
IDialogCreator dialogCreator,
IDataRepositoryExportTask dataRepositoryTask,
IChartDataToTableMapperFactory chartDataToTableMapperFactory,
IPKSimProjectRetriever projectRetriever)
{
_chartDataToTableMapperFactory = chartDataToTableMapperFactory;
_projectRetriever = projectRetriever;
_dialogCreator = dialogCreator;
_dataRepositoryTask = dataRepositoryTask;
}
protected override void Context()
{
_dialogCreator = A.Fake <IDialogCreator>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_quantityDisplayPathMapper = A.Fake <IQuantityPathToQuantityDisplayPathMapper>();
_pkAnalysesTask = A.Fake <IPKAnalysesTask>();
_globalPKAnalysisMapper = A.Fake <IGlobalPKAnalysisToDataTableMapper>();
_dimensionFactory = A.Fake <IDimensionFactory>();
sut = new PKAnalysisExportTask(_dialogCreator, _dataRepositoryTask, _quantityDisplayPathMapper, _globalPKAnalysisMapper, _dimensionFactory);
}
protected override void Context()
{
_context = A.Fake <IInteractionTaskContext>();
_simulationPersistor = A.Fake <ISimulationPersistor>();
_dialogCreator = A.Fake <IDialogCreator>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_simulationModelExporter = A.Fake <ISimModelExporter>();
_reportCreator = A.Fake <IModelReportCreator>();
_dimensionFactory = A.Fake <IDimensionFactory>();
_parameterIdentificationSimulationPathUpdater = A.Fake <IParameterIdentificationSimulationPathUpdater>();
sut = new EditTasksForSimulation(_context, _simulationPersistor, _dialogCreator, _dataRepositoryTask, _reportCreator, _simulationModelExporter, _dimensionFactory, _parameterIdentificationSimulationPathUpdater);
}
public PKAnalysisExportTask(
IDialogCreator dialogCreator,
IDataRepositoryExportTask dataRepositoryTask,
IQuantityPathToQuantityDisplayPathMapper quantityDisplayPathMapper,
IGlobalPKAnalysisToDataTableMapper globalPKAnalysisToDataTableMapper,
IDimensionFactory dimensionFactory)
{
_dialogCreator = dialogCreator;
_dataRepositoryTask = dataRepositoryTask;
_globalPKAnalysisToDataTableMapper = globalPKAnalysisToDataTableMapper;
_dimensionFactory = dimensionFactory;
_quantityDisplayPathMapper = quantityDisplayPathMapper;
}
protected override void Context()
{
_dialogCreator = A.Fake <IDialogCreator>();
_context = A.Fake <IOSPSuiteExecutionContext>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_containerTask = A.Fake <IContainerTask>();
_objectTypeResolver = A.Fake <IObjectTypeResolver>();
sut = new ObservedDataTaskForSpecs(_dialogCreator, _context, _dataRepositoryTask, _containerTask, _objectTypeResolver);
_obsData1 = DomainHelperForSpecs.ObservedData("OBS1");
_obsData2 = DomainHelperForSpecs.ObservedData("OBS2");
A.CallTo(() => _context.Project.AllUsersOfObservedData).Returns(_allUserOfObservedData);
}
public ObservedDataTask(
IDataImporter dataImporter,
IDimensionFactory dimensionFactory,
IMoBiContext context,
IDialogCreator dialogCreator,
IInteractionTask interactionTask,
IDataRepositoryExportTask dataRepositoryTask,
IContainerTask containerTask,
IObjectTypeResolver objectTypeResolver) : base(dialogCreator, context, dataRepositoryTask, containerTask, objectTypeResolver)
{
_dataImporter = dataImporter;
_mobiDialogCreator = dialogCreator;
_interactionTask = interactionTask;
_dimensionFactory = dimensionFactory;
_context = context;
}
protected override Task Context()
{
_quantityDisplayPathMapper = A.Fake <IQuantityPathToQuantityDisplayPathMapper>();
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_dialogCreator = A.Fake <IDialogCreator>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_stringSerializer = A.Fake <IStringSerializer>();
_modelReportCreator = A.Fake <IModelReportCreator>();
_simulationMapper = A.Fake <ISimulationToModelCoreSimulationMapper>();
_simModelExporter = A.Fake <ISimModelExporter>();
_simulationResultsToDataTableConverter = A.Fake <ISimulationResultsToDataTableConverter>();
_populationSimulationPKAnalysesToDataTableConverter = A.Fake <IPopulationSimulationPKAnalysesToDataTableConverter>();
sut = new SimulationExportTask(_lazyLoadTask, _dialogCreator, _dataRepositoryTask, _quantityDisplayPathMapper,
_stringSerializer, _modelReportCreator, _simulationMapper, _simModelExporter, _simulationResultsToDataTableConverter, _populationSimulationPKAnalysesToDataTableConverter);
return(_completed);
}
protected override Task Context()
{
_snapshotTask = A.Fake <ISnapshotTask>();
_jsonSerializer = A.Fake <IJsonSerializer>();
_workspace = A.Fake <ICoreWorkspace>();
_workspacePersistor = A.Fake <IWorkspacePersistor>();
_exportSimulationRunner = A.Fake <IExportSimulationRunner>();
_logger = A.Fake <ILogger>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_markdownReporterTask = A.Fake <IMarkdownReporterTask>();
sut = new QualificationRunner(_snapshotTask, _jsonSerializer, _workspace, _workspacePersistor, _exportSimulationRunner, _dataRepositoryTask, _markdownReporterTask, _logger);
_runOptions = new QualificationRunOptions();
_qualificationConfiguration = new QualifcationConfiguration();
return(_completed);
}
public ObservedDataTask(
IPKSimProjectRetriever projectRetriever,
IExecutionContext executionContext,
IDialogCreator dialogCreator,
IApplicationController applicationController,
IDataRepositoryExportTask dataRepositoryTask,
ITemplateTask templateTask,
IContainerTask containerTask,
IObservedDataPersistor observedDataPersistor,
IObjectTypeResolver objectTypeResolver) : base(dialogCreator, executionContext, dataRepositoryTask, containerTask, objectTypeResolver)
{
_projectRetriever = projectRetriever;
_executionContext = executionContext;
_applicationController = applicationController;
_templateTask = templateTask;
_observedDataPersistor = observedDataPersistor;
}
public EditTasksForSimulation(
IInteractionTaskContext interactionTaskContext,
ISimulationPersistor simulationPersistor,
IDialogCreator dialogCreator,
IDataRepositoryExportTask dataRepositoryTask,
IModelReportCreator reportCreator,
ISimModelExporter simModelExporter,
IDimensionFactory dimensionFactory,
IParameterIdentificationSimulationPathUpdater parameterIdentificationSimulationPathUpdater) : base(interactionTaskContext)
{
_simulationPersistor = simulationPersistor;
_dialogCreator = dialogCreator;
_dataRepositoryTask = dataRepositoryTask;
_reportCreator = reportCreator;
_simModelExporter = simModelExporter;
_dimensionFactory = dimensionFactory;
_parameterIdentificationSimulationPathUpdater = parameterIdentificationSimulationPathUpdater;
}
protected override void Context()
{
_containerTask = A.Fake <IContainerTask>();
_projectRetriever = A.Fake <IPKSimProjectRetriever>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_executionContext = A.Fake <IExecutionContext>();
_dialogCreator = A.Fake <IDialogCreator>();
_applicationController = A.Fake <IApplicationController>();
_templateTask = A.Fake <ITemplateTask>();
_project = new PKSimProject();
_observedDataPersistor = A.Fake <IObservedDataPersistor>();
A.CallTo(() => _projectRetriever.CurrentProject).Returns(_project);
A.CallTo(() => _projectRetriever.Current).Returns(_project);
A.CallTo(() => _executionContext.Project).Returns(_project);
_objectTypeResolver = A.Fake <IObjectTypeResolver>();
sut = new ObservedDataTask(_projectRetriever, _executionContext, _dialogCreator, _applicationController,
_dataRepositoryTask, _templateTask, _containerTask, _observedDataPersistor, _objectTypeResolver);
}
protected override void Context()
{
_dialogCreator = A.Fake <IDialogCreator>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_dimensionFactory = A.Fake <IDimensionFactory>();
sut = new CurveChartExportTask(_dialogCreator, _dataRepositoryTask, _dimensionFactory);
var dataRepository = DomainHelperForSpecs.SimulationDataRepositoryFor("Sim");
_curve = new Curve();
_curve.SetxData(dataRepository.BaseGrid, _dimensionFactory);
var dataColumn = dataRepository.AllButBaseGrid().First();
_curve.SetyData(dataColumn, _dimensionFactory);
_mergedDimensionDataColumn = A.Fake <IDimension>();
A.CallTo(() => _dimensionFactory.MergedDimensionFor(dataRepository.BaseGrid)).Returns(dataRepository.BaseGrid.Dimension);
A.CallTo(() => _dimensionFactory.MergedDimensionFor(dataColumn)).Returns(_mergedDimensionDataColumn);
}
public QualificationRunner(ISnapshotTask snapshotTask,
IJsonSerializer jsonSerializer,
ICoreWorkspace workspace,
IWorkspacePersistor workspacePersistor,
IExportSimulationRunner exportSimulationRunner,
IDataRepositoryExportTask dataRepositoryExportTask,
IMarkdownReporterTask markdownReporterTask,
ILogger logger
)
{
_snapshotTask = snapshotTask;
_jsonSerializer = jsonSerializer;
_workspace = workspace;
_workspacePersistor = workspacePersistor;
_logger = logger;
_exportSimulationRunner = exportSimulationRunner;
_dataRepositoryExportTask = dataRepositoryExportTask;
_markdownReporterTask = markdownReporterTask;
}
protected override void Context()
{
_dataImporter = A.Fake <IDataImporter>();
_dimensionFactory = A.Fake <IDimensionFactory>();
_context = A.Fake <IMoBiContext>();
_dialogCreator = A.Fake <IDialogCreator>();
_dataRepository = new DataRepository {
new BaseGrid("", DimensionFactoryForSpecs.Factory.Dimension("Time"))
};
_interactionTask = A.Fake <IInteractionTask>();
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_containerTask = A.Fake <IContainerTask>();
_objectTypeResolver = A.Fake <IObjectTypeResolver>();
sut = new ObservedDataTask(_dataImporter, _dimensionFactory, _context, _dialogCreator, _interactionTask, _dataRepositoryTask, _containerTask, _objectTypeResolver);
_project = new MoBiProject();
A.CallTo(() => _context.Project).Returns(_project);
A.CallTo(() => _context.CurrentProject).Returns(_project);
}
protected override void Context()
{
_dataRepositoryTask = A.Fake <IDataRepositoryExportTask>();
_dimensionFactory = A.Fake <IDimensionFactory>();
sut = new WeightedDataRepositoryToDataTableMapper(_dataRepositoryTask, _dimensionFactory);
var baseGrid = new BaseGrid("name", _dimensionFactory.NoDimension)
{
Values = new[] { 0.0f }
};
var dataColumn = new DataColumn {
Values = new[] { 0.0f }
};
_dataRepository = new DataRepository {
baseGrid, dataColumn
};
_weightedObservedData = new WeightedObservedData(_dataRepository);
A.CallTo(() => _dataRepositoryTask.ToDataTable(A <IEnumerable <DataColumn> > ._, A <DataColumnExportOptions> ._)).Returns(new[] { new DataTable() });
}
public SimulationExportTask(
ILazyLoadTask lazyLoadTask,
IDialogCreator dialogCreator,
IDataRepositoryExportTask dataRepositoryTask,
IQuantityPathToQuantityDisplayPathMapper quantityDisplayPathMapper,
IStringSerializer stringSerializer,
IModelReportCreator modelReportCreator,
ISimulationToModelCoreSimulationMapper coreSimulationMapper,
ISimModelExporter simModelExporter,
ISimulationResultsToDataTableConverter simulationResultsToDataTableConverter,
IPopulationSimulationPKAnalysesToDataTableConverter populationSimulationPKAnalysesToDataTableConverter)
{
_lazyLoadTask = lazyLoadTask;
_dialogCreator = dialogCreator;
_dataRepositoryTask = dataRepositoryTask;
_quantityDisplayPathMapper = quantityDisplayPathMapper;
_stringSerializer = stringSerializer;
_modelReportCreator = modelReportCreator;
_coreSimulationMapper = coreSimulationMapper;
_simModelExporter = simModelExporter;
_simulationResultsToDataTableConverter = simulationResultsToDataTableConverter;
_populationSimulationPKAnalysesToDataTableConverter = populationSimulationPKAnalysesToDataTableConverter;
}
public DataRepositoryDataPresenter(IDataRepositoryDataView view, IDataRepositoryExportTask dataRepositoryTask)
: base(view)
{
_dataRepositoryTask = dataRepositoryTask;
}
public DataRepositoryDataPresenter(IDataRepositoryDataView view, IDataRepositoryExportTask dataRepositoryTask, IEditObservedDataTask editObservedDataTask)
: base(view)
{
_dataRepositoryTask = dataRepositoryTask;
_editObservedDataTask = editObservedDataTask;
}
public CurveChartExportTask(IDialogCreator dialogCreator, IDataRepositoryExportTask dataRepositoryExportTask, IDimensionFactory dimensionFactory)
{
_dialogCreator = dialogCreator;
_dataRepositoryExportTask = dataRepositoryExportTask;
_dimensionFactory = dimensionFactory;
}
public ObservedDataTaskForSpecs(IDialogCreator dialogCreator, IOSPSuiteExecutionContext executionContext, IDataRepositoryExportTask dataRepositoryTask, IContainerTask containerTask, IObjectTypeResolver objectTypeResolver) : base(dialogCreator, executionContext, dataRepositoryTask,
containerTask, objectTypeResolver)
{
}
public WeightedDataRepositoryToDataTableMapper(IDataRepositoryExportTask dataRepositoryTask, IDimensionFactory dimensionFactory)
{
_dataRepositoryTask = dataRepositoryTask;
_dimensionFactory = dimensionFactory;
}
public SimulationResultsExporter(IDataRepositoryExportTask dataRepositoryExportTask, IQuantityPathToQuantityDisplayPathMapper quantityDisplayPathMapper, ISimulationResultsToBatchSimulationExportMapper simulationExportMapper)
{
_dataRepositoryExportTask = dataRepositoryExportTask;
_quantityDisplayPathMapper = quantityDisplayPathMapper;
_simulationExportMapper = simulationExportMapper;
}
