internal static WittyerVariantInternal Create([NotNull] IVcfVariant baseVariant,
IInterval <uint> baseInterval,
WittyerVariantType svType,
IContigAndInterval startInterval, Winner win,
List <OverlapAnnotation> overlapInfo, IWittyerSample sample, IContigAndInterval endInterval)
=> new WittyerVariantInternal(baseVariant, baseInterval, svType, startInterval, win,
overlapInfo, sample, endInterval);
private static Mock <IWittyerVariant> SetupBasicVariant([NotNull] IContigAndInterval contigAndInterval)
{
var variant = new Mock <IWittyerVariant>();
variant.SetupGet(v => v.Contig).Returns(contigAndInterval.Contig);
variant.SetupGet(v => v.Start).Returns(contigAndInterval.Start);
variant.SetupGet(v => v.Stop).Returns(contigAndInterval.Stop);
variant.SetupGet(v => v.IsStartInclusive).Returns(contigAndInterval.IsStartInclusive);
variant.SetupGet(v => v.IsStopInclusive).Returns(contigAndInterval.IsStopInclusive);
return(variant);
}
private WittyerBndInternal([NotNull] IVcfVariant baseVariant, IInterval <uint> posInterval, Winner win,
IContigAndInterval endInterval,
List <OverlapAnnotation> overlapInfo, IWittyerSample sample, IVcfVariant endOriginalVariant, WittyerVariantType svType)
{
Contig = baseVariant.Contig;
_posInterval = posInterval;
EndInterval = endInterval;
OverlapInfo = overlapInfo;
Sample = sample;
OriginalVariant = baseVariant;
EndOriginalVariant = endOriginalVariant;
Win = win;
VariantType = svType;
}
private WittyerVariantInternal([NotNull] IVcfVariant baseVariant, IInterval <uint> baseInterval,
WittyerVariantType svType,
IContigAndInterval posInterval, Winner win,
List <OverlapAnnotation> overlapInfo, IWittyerSample sample, IContigAndInterval endInterval)
{
OriginalVariant = baseVariant;
Contig = baseVariant.Contig;
VariantType = svType;
Win = win;
OverlapInfo = overlapInfo;
Sample = sample;
_baseInterval = baseInterval;
PosInterval = posInterval;
EndInterval = endInterval;
}
private WittyerBndInternal([NotNull] WittyerType svType, [NotNull] IVcfVariant baseVariant,
[NotNull] IInterval <uint> posInterval, [NotNull] IInterval <uint> ciPosInterval,
[NotNull] IVcfVariant endOriginalVariant, [NotNull] IContigAndInterval endInterval,
[NotNull] IInterval <uint> ciEndInterval, [NotNull] Winner win, [NotNull] IWittyerSample sample)
{
Contig = baseVariant.Contig;
_posInterval = posInterval;
EndInterval = endInterval;
Sample = sample;
OriginalVariant = baseVariant;
EndOriginalVariant = endOriginalVariant;
Win = win;
VariantType = svType;
CiPosInterval = ciPosInterval;
CiEndInterval = ciEndInterval;
}
private WittyerVariantInternal([NotNull] WittyerType svType, [NotNull] IVcfVariant baseVariant,
[NotNull] IInterval <uint> baseInterval, [NotNull] Winner win,
[NotNull] IContigAndInterval posInterval, [NotNull] IInterval <uint> ciPosInterval,
[NotNull] IContigAndInterval endInterval, [NotNull] IInterval <uint> ciEndInterval,
[NotNull] IWittyerSample sample)
{
OriginalVariant = baseVariant;
Contig = baseVariant.Contig;
VariantType = svType;
Win = win;
Sample = sample;
_baseInterval = baseInterval;
PosInterval = posInterval;
EndInterval = endInterval;
CiPosInterval = ciPosInterval;
CiEndInterval = ciEndInterval;
}
/// <inheritdoc /> public bool Equals(IContigAndInterval other) => ContigAndIntervalComparer.Default.Equals(this, other);
/// <inheritdoc /> public int CompareTo(IContigAndInterval other) => ContigAndIntervalComparer.Default.Compare(this, other);
internal static IWittyerBnd Create([NotNull] IVcfVariant baseVariant, IInterval <uint> posInterval,
Winner win, IContigAndInterval endInterval, List <OverlapAnnotation> overlapInfo,
IWittyerSample sample, IVcfVariant endOriginalVariant, WittyerVariantType svType)
=> new WittyerBndInternal(baseVariant, posInterval, win, endInterval, overlapInfo, sample,
endOriginalVariant, svType);
public bool Equals(IContigAndInterval other)
{
return(ContigAndIntervalComparer.Default.Equals(this, other));
}
public int CompareTo(IContigAndInterval other)
{
return(ContigAndIntervalComparer.Default.Compare(this, other));
}
