void ValidateTryGetAmbiguousSymbol(AlphabetsTypes option)
{
IAlphabet alphabetInstance = null;
HashSet <byte> basicSymbols = new HashSet <byte>();
byte ambiguousSymbol = 0, expectedAmbiguousSymbol = 0;
switch (option)
{
case AlphabetsTypes.Protein:
alphabetInstance = AmbiguousProteinAlphabet.Instance;
basicSymbols.Add((byte)'Q');
basicSymbols.Add((byte)'E');
expectedAmbiguousSymbol = (byte)'Z';
break;
case AlphabetsTypes.Rna:
alphabetInstance = AmbiguousRnaAlphabet.Instance;
basicSymbols.Add((byte)'G');
basicSymbols.Add((byte)'C');
expectedAmbiguousSymbol = (byte)'S';
break;
case AlphabetsTypes.Dna:
alphabetInstance = AmbiguousDnaAlphabet.Instance;
basicSymbols.Add((byte)'G');
basicSymbols.Add((byte)'A');
expectedAmbiguousSymbol = (byte)'R';
break;
}
Assert.IsTrue(alphabetInstance.TryGetAmbiguousSymbol(basicSymbols, out ambiguousSymbol));
Assert.AreEqual(expectedAmbiguousSymbol, ambiguousSymbol);
ApplicationLog.WriteLine(string.Concat(@"Alphabets BVT: Validation of
Try Get Ambiguous symbol for ", option, " completed successfully."));
}
public void TestDnaAlphabetTryGetAmbiguousSymbols()
{
byte basicSymbol;
IAlphabet alphabet = AmbiguousDnaAlphabet.Instance;
Assert.AreEqual(true, alphabet.TryGetAmbiguousSymbol(new HashSet <byte>()
{
(byte)'A', (byte)'C'
}, out basicSymbol));
Assert.IsTrue(basicSymbol == (byte)'M');
alphabet = AmbiguousRnaAlphabet.Instance;
Assert.AreEqual(true, alphabet.TryGetAmbiguousSymbol(new HashSet <byte>()
{
(byte)'U', (byte)'C'
}, out basicSymbol));
Assert.IsTrue(basicSymbol == (byte)'Y');
}
public void TestProteinAlphabetTryGetAmbiguousSymbols()
{
byte basicSymbol;
IAlphabet alphabet = AmbiguousProteinAlphabet.Instance;
Assert.AreEqual(true, alphabet.TryGetAmbiguousSymbol(new HashSet <byte>()
{
(byte)'D', (byte)'N'
}, out basicSymbol));
Assert.IsTrue(basicSymbol == (byte)'B');
}
