private HygeaOptions GetBasicOptions()
{
var basicOptions = new HygeaOptions()
{
BAMPaths = new[] { _existingBamPath },
GenomePaths = new[] { _existingGenome }
};
basicOptions.SetIODirectories("Hygea");
return(basicOptions);
}
public void GetLogFolder()
{
var options = GetBasicOptions();
Assert.Equal(Path.Combine(Path.GetDirectoryName(_existingBamPath), "HygeaLogs"), options.LogFolder);
// when multiple bam paths, use first bam file
options = new HygeaOptions();
var nonExistingBam = Path.Combine(TestPaths.LocalScratchDirectory, "nonexistant.bam");
options.BAMPaths = new[] { nonExistingBam, _existingBamPath };
options.SetIODirectories("Hygea");
Assert.Equal(Path.Combine(Path.GetDirectoryName(nonExistingBam), "HygeaLogs"), options.LogFolder);
// use output folder if provided
options = new HygeaOptions();
options.BAMPaths = new[] { _existingBamPath };
options.OutputDirectory = @"C:\SomeOutput";
options.SetIODirectories("Hygea");
Assert.Equal(Path.Combine(options.OutputDirectory, "HygeaLogs"), options.LogFolder);
}