/// <summary>
/// insert data into database
/// </summary>
private void InsertDataIntoDb()
{
dbInsert.InsertDataIntoDBtables(ProtCidSettings.protcidDbConnection, HomoGroupTables.homoGroupTables[HomoGroupTables.HomoSeqInfo]);
InsertAlignmentData();
HomoGroupTables.ClearTables();
}
/// <summary>
///
/// </summary>
/// <param name="groupSeqId"></param>
private void InsertUpdateDataIntoDb(int groupSeqId)
{
UpdateAlignmentData(groupSeqId);
DeletePfamHomoGroupInfo(groupSeqId);
dbInsert.InsertDataIntoDBtables(ProtCidSettings.protcidDbConnection, HomoGroupTables.homoGroupTables[HomoGroupTables.HomoSeqInfo]);
HomoGroupTables.ClearTables();
}
public void ClassifyHomoEntries(string[] entryList)
{
InitializeTables();
DeleteObsHomoGroupDataInDb(groupSeqNum);
AddEntryDataToTable(entryList, groupSeqNum);
RetrieveRepEntries();
dbInsert.InsertDataIntoDBtables(ProtCidSettings.protcidDbConnection, HomoGroupTables.homoGroupTables);
HomoGroupTables.ClearTables();
}
/// <summary>
/// classify pfam group into subgroups based on
/// number of entities and domain families
/// </summary>
/// <param name="entryList"></param>
private void UpdateEntryPfamArchGroupTables(int groupSeqId, string[] groupEntries)
{
AddEntryDataToTable(groupEntries, groupSeqId);
UpdateHomoGroupRepAlignTables();
DeletePfamHomoGroupInfo(groupSeqId);
dbInsert.InsertDataIntoDBtables(ProtCidSettings.protcidDbConnection, HomoGroupTables.homoGroupTables[HomoGroupTables.HomoSeqInfo]);
HomoGroupTables.ClearTables();
entryAlignment.entryEntityFamilyTable.Clear();
}
/// <summary>
/// used for user-defined groups
/// </summary>
/// <param name="entryList"></param>
/// <param name="groupName"></param>
public void ClassifyHomoEntries(string[] entryList, string groupName)
{
InitializeTables();
DeleteObsHomoGroupDataInDb(groupSeqNum);
DataRow familyRow = HomoGroupTables.homoGroupTables[HomoGroupTables.FamilyGroups].NewRow();
familyRow["GroupSeqId"] = groupSeqNum;
familyRow["FamilyString"] = groupName;
HomoGroupTables.homoGroupTables[HomoGroupTables.FamilyGroups].Rows.Add(familyRow);
AddEntryDataToTable(entryList, groupSeqNum);
RetrieveRepEntries();
dbInsert.InsertDataIntoDBtables(ProtCidSettings.protcidDbConnection, HomoGroupTables.homoGroupTables);
HomoGroupTables.ClearTables();
}