/// <summary>
/// Enumerates all the alleles in this genotype at the specified resolution
/// </summary>
/// <param name="resolution"></param>
/// <returns></returns>
public IEnumerable <string> Enumerate(HlaIResolution resolution)
{
foreach (HlaI hla in NonMissingHlas)
{
foreach (string type in hla.Enumerate(resolution))
{
yield return(type);
}
}
}
/// <summary>
/// Enumerates all values at the given resolution.
/// </summary>
/// <param name="resolution"></param>
/// <returns></returns>
public IEnumerable <string> Enumerate(HlaIResolution resolution)
{
switch (resolution)
{
case HlaIResolution.Group:
return(_groups.Select(type => Locus.ToString() + type));
case HlaIResolution.Protein:
return(_proteins.Select(type => Locus.ToString() + type));
case HlaIResolution.Synonymous:
return(_synChanges.Select(type => Locus.ToString() + type));
default:
throw new NotImplementedException("Can't get here.");
}
}
/// <summary>
/// Clears all resolution details that are higher than the specified resolution.
/// </summary>
/// <param name="resolution"></param>
public void SetMaxResolution(HlaIResolution resolution)
{
switch (resolution)
{
case HlaIResolution.Synonymous:
return;
case HlaIResolution.Protein:
this._synChanges.Clear();
return;
case HlaIResolution.Group:
this._synChanges.Clear();
this._proteins.Clear();
return;
default:
throw new NotImplementedException("Shouldn't be possible.");
}
}
/// <summary>
/// Clears all resolution details that are higher than the specified resolution.
/// </summary>
/// <param name="resolution"></param>
public void SetMaxResolution(HlaIResolution resolution)
{
AllHlas().Where(hla => hla != null).ForEach(hla => hla.SetMaxResolution(resolution));
}