private void SaveButton_Click(object sender, RoutedEventArgs e)
{
string crosslinkerPath = Path.Combine(GlobalVariables.DataDir, @"Data");
string customCrosslinkPath = Path.Combine(crosslinkerPath, @"CustomCrosslinkers.tsv");
List <string> customCrosslinkerText = new List <string>();
if (File.Exists(customCrosslinkPath))
{
customCrosslinkerText = File.ReadAllLines(customCrosslinkPath).ToList();
}
else
{
customCrosslinkerText.Add("Name\tCrosslinkAminoAcid\tCrosslinkerAminoAcid2\tCleavable\tDissociationType\tCrosslinkerTotalMass\tCrosslinkerShortMass\tCrosslinkerLongMass\tQuenchMassH2O\tQuenchMassNH2\tQuenchMassTris");
}
string name = txtUdXLKerName.Text;
string aminoAcid1 = txtUdXLkerAminoAcids.Text;
string aminoAcid2 = txtUdXLkerAminoAcids2.Text;
bool isCleavable = ckbUdXLkerCleavable.IsChecked.Value;
string dissociationTypes = txtDissociationType.Text;
double mass = double.Parse(txtUdXLkerTotalMs.Text == "" ? "0" : txtUdXLkerTotalMs.Text);
double shortMass = double.Parse(txtUdXLkerShortMass.Text == "" ? "0" : txtUdXLkerShortMass.Text);
double longMass = double.Parse(txtUdXLkerLongMass.Text == "" ? "0" : txtUdXLkerLongMass.Text);
double H2OQuenchMass = double.Parse(txtH2OQuenchMass.Text == "" ? "0" : txtH2OQuenchMass.Text);
double NH2QuenchMass = double.Parse(txtNH2QuenchMass.Text == "" ? "0" : txtNH2QuenchMass.Text);
double TrisQuenchMass = double.Parse(txtTrisQuenchMass.Text == "" ? "0" : txtTrisQuenchMass.Text);
if (GlobalVariables.Crosslinkers.Any(p => p.CrosslinkerName.Contains(name)))
{
MessageBox.Show("A crosslinker already exists with the name: " + name, "Error", MessageBoxButton.OK, MessageBoxImage.Hand);
return;
}
var newCrosslinker = new Crosslinker(crosslinkerName: name, crosslinkerModSites: aminoAcid1, crosslinkerModSites2: aminoAcid2, totalMass: mass, cleavable: isCleavable, dissociationTypes: dissociationTypes,
cleaveMassShort: shortMass, cleaveMassLong: longMass, loopMass: mass, deadendMassH2O: H2OQuenchMass, deadendMassNH2: NH2QuenchMass, deadendMassTris: TrisQuenchMass);
customCrosslinkerText.Add(newCrosslinker.ToString(true));
try
{
File.Delete(customCrosslinkPath);
File.WriteAllLines(customCrosslinkPath, customCrosslinkerText);
}
catch (Exception ex)
{
MessageBox.Show("Problem saving custom crosslinker to file: " + ex.Message, "Error", MessageBoxButton.OK, MessageBoxImage.Hand);
return;
}
GlobalVariables.AddCrosslinkers(new List <Crosslinker> {
newCrosslinker
});
DialogResult = true;
}
