private void FindOrCreateVariant()
{
if (
!int.TryParse(_currentRow[LikeDataLoader.ColStart], out var start) ||
!int.TryParse(_currentRow[LikeDataLoader.ColEnd], out var end)
)
{
throw new InvalidOperationException("start and end required");
}
if (_currentRow[LikeDataLoader.ColVariantType] == null)
{
throw new InvalidOperationException("start and end required");
}
CurrentVariant = _context.GeneVariant
.SingleOrDefault(
gv => gv.Start == start &&
gv.End == end &&
gv.VariantTypeId == _variantTypeMap[_currentRow[LikeDataLoader.ColVariantType]].Id
);
if (CurrentVariant != null)
{
return;
}
CurrentVariant = new GeneVariant
{
Start = start,
End = end,
VariantTypeId = _variantTypeMap[_currentRow[LikeDataLoader.ColVariantType]].Id
};
_context.GeneVariant.Add(CurrentVariant);
}
public ICollection <AnnotationGeneVariant> Resolve(GeneVariantDto source, GeneVariant destination, ICollection <AnnotationGeneVariant> destMember, ResolutionContext context)
{
return(source.Annotation?.Select(annotationDto => new AnnotationGeneVariant
{
Annotation = context.Mapper.Map <Annotation>(annotationDto),
GeneVariant = destination
})
.ToList());
}
public LikeVariantLiteratureDataLoader(
GeneAnnotationDBContext context,
IReadOnlyList <string> currentRow,
GeneVariant currentVariant
)
{
_context = context;
_currentRow = currentRow;
CurrentVariant = currentVariant;
}
public void NewVariantTest()
{
var variant = new GeneVariant
{
Start = 1,
End = 30,
VariantTypeId = _variantTypeMap["1"].Id,
ZygosityTypeId = 1
};
var ex = Record.Exception(
() =>
{
_context.GeneVariant.Add(variant);
_context.SaveChanges();
}
);
Assert.Null(ex);
}
public ICollection <GeneVariantLiterature> Resolve(GeneVariantDto source, GeneVariant destination, ICollection <GeneVariantLiterature> destMember, ResolutionContext context)
{
throw new System.NotImplementedException();
}
