protected override Framework.Core.Evaluation.Results.Results internalRun(Database <TInputRecord> inputDatabase)
{
//create database subsets
TrainTestAndValidationDatabaseSubsetCreator <TInputRecord> ttvSubset =
new Framework.Extensions.Standard.Database.Subsets.TrainTestAndValidationDatabaseSubsetCreator <TInputRecord>(
inputDatabase,
settings.ValidatorSamplesRatio,
settings.TrainTestSamplesRatio
);
//template subset
Database <TInputRecord> trainDbSubset = ttvSubset.getDatabaseSubset(TrainTestAndValidationDatabaseSubsetCreator <TInputRecord> .TrainSubset);
Database <TInputRecord> testDbSubset = ttvSubset.getDatabaseSubset(TrainTestAndValidationDatabaseSubsetCreator <TInputRecord> .TestSubset);
Database <TInputRecord> validationDbSubset = ttvSubset.getDatabaseSubset(TrainTestAndValidationDatabaseSubsetCreator <TInputRecord> .ValidationSubset);
this.trainableObject.ProgressChangedEvent += new Framework.Core.ProgressChangedEventHandler(trainableObject_ProgressChangedEvent);
Console.WriteLine("Training");
this.trainableObject.train(trainDbSubset.getCollections());
Console.WriteLine();
Console.WriteLine("Training done");
Console.WriteLine("-------------");
Console.WriteLine("Testing");
double error = this.trainableObject.test(testDbSubset.getCollections());
Console.WriteLine();
Console.WriteLine("Testing error is " + error);
Console.WriteLine("-------------");
Console.WriteLine("Validation start");
Framework.Core.Evaluation.Results.Results r = base.internalRun(validationDbSubset);
//Framework.Core.Evaluation.Results.Results r = base.internalRun(inputDatabase);
Console.WriteLine("Validation done");
return(r);
}
protected virtual BIO.Framework.Core.Evaluation.Results.Results internalRun(Database <TInputRecord> inputDatabase)
{
//create database subsets
TemplateAndEvaluationDatabaseSubsetCreator <TInputRecord> templateTestSubset =
new Framework.Extensions.Standard.Database.Subsets.TemplateAndEvaluationDatabaseSubsetCreator <TInputRecord>(
inputDatabase,
settings.TemplateSamples
);
//template subset
Database <TInputRecord> templateDbSubset = templateTestSubset.getDatabaseSubset(TemplateAndEvaluationDatabaseSubsetCreator <TInputRecord> .TemplateSubset);
//debugging console output
this.printDbOverview("Templates database subset", templateDbSubset.getCollections());
//database for templates
BIO.Framework.Core.Database.TemplateDatabase.TemplateDatabase templateDatabase = new BIO.Framework.Core.Database.TemplateDatabase.TemplateDatabase();
//progress report event
settings.getBlockEvaluator().ProgressChangedEvent += new Framework.Core.ProgressChangedEventHandler(evaluator_ProgressChangedEvent);
//template extraction
Console.WriteLine("Template extraction");
settings.getBlockEvaluator().extractTemplates(
templateDbSubset.getCollections(),
templateDatabase
);
Console.WriteLine();
Console.WriteLine("Template extraction done");
Console.WriteLine();
//test subset
Database <TInputRecord> testDbSubset = templateTestSubset.getDatabaseSubset(TemplateAndEvaluationDatabaseSubsetCreator <TInputRecord> .EvaluationSubset);
//debugging console output
this.printDbOverview("Evaluation database subset", testDbSubset.getCollections());
//templates are ready - now evaluate db
Console.WriteLine("Algorithm evaluation");
//where to store results
BIO.Framework.Core.Evaluation.Results.Results results = new Framework.Core.Evaluation.Results.Results();
//own evaluation
settings.getBlockEvaluator().evaluateRecords(
testDbSubset.getCollections(),
templateDatabase,
results);
Console.WriteLine();
Console.WriteLine("Algorithm evaluation done");
//save results to file (xml|binary and plain|zipped)
string fileName = "results.zip";
ResultsPersistence persistence = new ResultsPersistence(new CompressedResultsPersistence <XmlResultsSerializer>());
persistence.saveResults(results, fileName);
Console.WriteLine("Results saved to " + fileName);
//postprocess results
List <IResultsVisualizer> postprocessors = new List <IResultsVisualizer>();
//statistics
postprocessors.Add(new BIO.Framework.Extensions.Standard.Evaluation.Results.Visualization.StatisticsSummaryResultsPostprocessor("summary.txt"));
//genuine x impostor graph
postprocessors.Add(new BIO.Framework.Extensions.ZedGraph.Evaluation.Results.Visualization.ZedGraphResultsGraphVisualizer("GenuineImpostor.png"));
foreach (IResultsVisualizer pp in postprocessors)
{
pp.ProgressChangedEvent += new Framework.Core.ProgressChangedEventHandler(evaluator_ProgressChangedEvent);
pp.postprocessResults(results);
}
Console.WriteLine();
return(results);
}