//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//ORIGINAL LINE: public void addGenotype(final BCF2Encoder encoder, final org.broadinstitute.variant.variantcontext.VariantContext vc, final org.broadinstitute.variant.variantcontext.Genotype g) throws java.io.IOException
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
public override void addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
{
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final String fieldValue = g.getFilters();
string fieldValue = g.Filters;
FieldEncoder.encodeValue(encoder, fieldValue, encodingType, nValuesPerGenotype);
}
//JAVA TO C# CONVERTER TODO TASK: Most Java annotations will not have direct .NET equivalent attributes:
//ORIGINAL LINE: @Requires({"encodingType != null", "nValuesPerGenotype >= 0"}) public void addGenotype(final BCF2Encoder encoder, final org.broadinstitute.variant.variantcontext.VariantContext vc, final org.broadinstitute.variant.variantcontext.Genotype g) throws java.io.IOException
//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
public virtual void addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
{
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final Object fieldValue = g.getExtendedAttribute(getField(), null);
object fieldValue = g.getExtendedAttribute(Field, null);
FieldEncoder.encodeValue(encoder, fieldValue, encodingType, nValuesPerGenotype);
}
//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//ORIGINAL LINE: public void site(final BCF2Encoder encoder, final org.broadinstitute.variant.variantcontext.VariantContext vc) throws java.io.IOException
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
public override void site(BCF2Encoder encoder, VariantContext vc)
{
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final Object rawValue = vc.getAttribute(getField(), null);
object rawValue = vc.getAttribute(Field, null);
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final org.broadinstitute.variant.bcf2.BCF2Type type = getFieldEncoder().getType(rawValue);
BCF2Type type = FieldEncoder.getType(rawValue);
if (rawValue == null)
{
// the value is missing, just write in null
encoder.encodeType(0, type);
}
else
{
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final int valueCount = getFieldEncoder().numElements(vc, rawValue);
int valueCount = FieldEncoder.numElements(vc, rawValue);
encoder.encodeType(valueCount, type);
FieldEncoder.encodeValue(encoder, rawValue, type, valueCount);
}
}
//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//ORIGINAL LINE: public void addGenotype(final BCF2Encoder encoder, final org.broadinstitute.variant.variantcontext.VariantContext vc, final org.broadinstitute.variant.variantcontext.Genotype g) throws java.io.IOException
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
public override void addGenotype(BCF2Encoder encoder, VariantContext vc, Genotype g)
{
FieldEncoder.encodeValue(encoder, ige.getValues(g), encodingType, nValuesPerGenotype);
}
