public void Process_WithTwoReadingsWithSameNameButDifferentReadingDataNames_SendsOneDataPointToSubscribersWithTwoReadingDataValues()
{
IList <FeatureStatistics> passedDataPoints = null;
ReadingPublisher.Subscribe(GetSubscriber((dataPoints) =>
{
passedDataPoints = dataPoints;
}));
ReadingPublisher.PublishReading(new Reading {
FeatureName = "DataPointName", Data = new Int32ReadingData(1)
{
Name = "Number"
}
});
ReadingPublisher.PublishReading(new Reading {
FeatureName = "DataPointName", Data = new Int32ReadingData(1)
{
Name = "Error"
}
});
ReadingPublisher.Start(100, false);
ReadingPublisher.Process();
FeatureStatistics dataPoint = passedDataPoints.First();
Assert.That(dataPoint.Readings.Count, Is.EqualTo(2));
Assert.That(dataPoint.Readings.First().Name, Is.EqualTo("Number"));
Assert.That(dataPoint.Readings.Last().Name, Is.EqualTo("Error"));
}
public void Merge(ImportDataStore originalDataStore, ImportDataStore mergedDataStore,
FeatureStatistics statistics)
{
var transcriptDict = GetMergedTranscripts(originalDataStore);
mergedDataStore.Transcripts.AddRange(transcriptDict.Values.ToList());
statistics.Increment(mergedDataStore.Transcripts.Count, originalDataStore.Transcripts.Count);
}
/// <summary>
/// constructor
/// </summary>
public VepCacheParser(TranscriptDataSource ds)
{
ImportDataStore.TranscriptSource = ds;
_uniqueDataStore = new ImportDataStore();
_nonUniquedataStore = new ImportDataStore();
_tempDataStore = new ImportDataStore();
_regulatoryStatistics = new FeatureStatistics("Regulatory");
_transcriptStatistics = new FeatureStatistics("Transcripts");
_geneStatistics = new FeatureStatistics("Genes");
_intronStatistics = new FeatureStatistics("Introns");
_exonStatistics = new FeatureStatistics("Exons");
_mirnaStatistics = new FeatureStatistics("miRNAs");
_siftStatistics = new FeatureStatistics("SIFT matrices");
_polyphenStatistics = new FeatureStatistics("PolyPhen matrices");
_cdnaStatistics = new FeatureStatistics("cDNA seqs");
_peptideStatistics = new FeatureStatistics("Peptide seqs");
}
public void Merge(ImportDataStore originalDataStore, ImportDataStore mergedDataStore, FeatureStatistics statistics)
{
var regulatoryDict = GetMergedRegulatoryRegions(originalDataStore);
mergedDataStore.RegulatoryFeatures.AddRange(regulatoryDict.Values.ToList());
statistics.Increment(mergedDataStore.RegulatoryFeatures.Count, originalDataStore.RegulatoryFeatures.Count);
}
