public async Task <ActionResult> Get(Guid id, AnnotationNavId navId = AnnotationNavId.Term)
{
var annotation = await FaToolDbEntities.Find <Annotation>(id);
if (annotation == null)
{
return(HttpNotFound("Entity not found in database."));
}
await FaToolDbEntities.LoadReference(annotation, x => x.Term, "Ontology");
ViewBag.Title = string.Format("Annotation '{0}' - [{1}]", annotation.Term.Name, navId.ToString());
var model = new EntityView <Annotation, AnnotationNavId>();
model.NavTabs = Url.CreateNavTabs <Guid?, AnnotationNavId>(id);
model.ActiveTab = model.NavTabs.ToggleActive(navId);
model.Properties = new AnnotationRecordView(annotation);
model.Properties.Actions.Add(Url.EntityActionLink("Edit", "Edit", id, User.IsAdminRole() == false));
model.Properties.Actions.Add(Url.EntityGetActionLink("Back to Protein", "Proteins", annotation.FK_Protein, ProteinNavId.Functions));
switch (navId)
{
case AnnotationNavId.Term:
await FaToolDbEntities.LoadReference(annotation, x => x.Term, "Ontology");
model.TabContent = new TermRecordView(annotation.Term);
break;
case AnnotationNavId.References:
await FaToolDbEntities.LoadCollection(annotation, x => x.References);
model.TabContent = new ParamList(annotation.Params);
break;
case AnnotationNavId.Description:
await FaToolDbEntities.LoadCollection(annotation, x => x.Params, "Term.Ontology", "Unit.Ontology");
model.TabContent = new PubReferenceList(annotation.References);
break;
default:
break;
}
return(View("EntityDefault", model));
}
public async Task <ActionResult> Edit(Guid id)
{
var annotation = await FaToolDbEntities.Find <Annotation>(id);
if (annotation == null)
{
return(HttpNotFound("Entity not found in database."));
}
var editArgs = new AnnotationEditArgs();
editArgs.SaveAction = Url.Action("Update");
editArgs.EndEditAction = Url.EntityGetAction(annotation.ID);
return(await Edit(annotation, editArgs));
}
public async Task <ActionResult> Get(Guid id, ProteinNavId navId = ProteinNavId.Functions)
{
var protein = await FaToolDbEntities.Find <Protein>(id);
if (protein == null)
{
return(HttpNotFound("Protein not found in database."));
}
ViewBag.Title = string.Format("Protein '{0}' - [{1}]", protein.Name, navId.ToString());
var model = new EntityView <Protein, ProteinNavId>();
model.NavTabs = Url.CreateNavTabs <Guid?, ProteinNavId>(id);
model.ActiveTab = model.NavTabs.ToggleActive(navId);
model.Properties = new ProteinRecordView(protein);
switch (navId)
{
case ProteinNavId.Functions:
await FaToolDbEntities.LoadCollection(protein, x => x.Annotations, "Term.Ontology");
var annotationList = new AnnotationList(protein.Annotations);
annotationList.AddRowAction(x => Url.EntityGetActionLink("Show", "Annotations", x.ID));
annotationList.Actions.Add(Url.ActionLink("Add", "Create", "Annotations", new { proteinId = id }, User.IsAdminRole() == false));
model.TabContent = annotationList;
break;
case ProteinNavId.Synonyms:
await FaToolDbEntities.LoadCollection(protein, x => x.Synonyms, "SynonymType.Ontology");
model.TabContent = new SynonymList(protein.Synonyms);
break;
case ProteinNavId.Description:
await FaToolDbEntities.LoadCollection(protein, x => x.Params, "Term.Ontology", "Unit.Ontology");
model.TabContent = new ParamList(protein.Params);
break;
case ProteinNavId.References:
await FaToolDbEntities.LoadCollection(protein, x => x.References);
model.TabContent = new PubReferenceList(protein.References);
break;
case ProteinNavId.GeneModels:
await FaToolDbEntities.LoadCollection(protein, x => x.GeneModels, "GeneModelSource.Organism.Ontology");
model.TabContent = new GeneModelList(protein.GeneModels);
break;
case ProteinNavId.Homologs:
await FaToolDbEntities.LoadCollection(protein, x => x.ProteinHomologyGroups, "Group");
model.TabContent = new ProteinHomologyGroupList(protein.ProteinHomologyGroups);
break;
default:
throw new InvalidOperationException("Invalid nav id.");
}
return(View("EntityDefault", model));
}