public static void StartProcessing(ExclusionProfile exclusionProfile)
{
//log.Debug("Loading logistic regression model and creating exclusion profile");
//exclusionProfile = new MachineLearningGuidedExclusion(InputFileOrganizer.logisticRegressionClassifierSaveFile, ExclusionExplorer.database, GlobalVar.ppmTolerance, GlobalVar.retentionTimeWindowSize);
//exclusionProfile = new NoraExclusion(database,GlobalVar.XCorr_Threshold, GlobalVar.ppmTolerance, GlobalVar.NumDBThreshold, GlobalVar.retentionTimeWindowSize);
//exclusionProfile = new RandomExclusion(InputFileOrganizer.logisticRegressionClassifierSaveFile, database, GlobalVar.ppmTolerance, GlobalVar.retentionTimeWindowSize);
log.Debug("Initiating up DataProcessor Variables");
reset();
//Console.ReadKey();
preExperimentSetupFinished = true;
while (running || taskCounter > 0) //!parsedSpectra.IsEmpty
{
//Database searches any scan in processedScans FIFO queue as long as it's not empty
Spectra processedSpectra;
if (parsedSpectra.TryDequeue(out processedSpectra))
{
exclusionProfile.evaluate(processedSpectra);
double[] scanArrivalProcessedTime = { processedSpectra.getScanNum(), processedSpectra.getArrivalTime(), getCurrentMiliTime() };
scanArrivalAndProcessedTimeList.Add(scanArrivalProcessedTime);
Interlocked.Decrement(ref taskCounter);
}
}
log.Info("DataProcessor finished, processed {0} scans", scanIDCounter);
}
