/// <summary>
/// Creates a MoBi Event by the given SBML Event.
/// </summary>
internal void CreateEvent(Event sbmlEvent)
{
EventBuilder = new EventBuilder()
.WithId(sbmlEvent.getId() + SBMLConstants.SBML_EVENTBUILDER)
.WithName(sbmlEvent.getId())
.WithDescription(sbmlEvent.getNotesString());
if (sbmlEvent.isSetTrigger())
{
CreateCondition(sbmlEvent.getTrigger());
}
CreateEventAssignments(sbmlEvent);
CreateWarningsForUnsupportedFeatures(sbmlEvent);
EventGroupBuilder.Add(EventBuilder);
}
protected override void Context()
{
base.Context();
_eventGroupBuildingBlock = new EventGroupBuildingBlock();
var eventGroup = new EventGroupBuilder().WithName("EG");
_eventGroupBuildingBlock.Add(eventGroup);
var ehcStartEvent = new EventBuilder().WithName(Converter321To331.EHCStartEvent);
eventGroup.Add(ehcStartEvent);
var eabOldStart = new EventAssignmentBuilder().WithName("EAB1").WithFormula(new ExplicitFormula("ln(2) / EHC_Halftime * M * EHC_EjectionFraction"));
eabOldStart.UseAsValue = false;
eabOldStart.ObjectPath = new ObjectPath(new[] { "Organism", "Gallbladder", "Gallbladder emptying rate" });
ehcStartEvent.AddAssignment(eabOldStart);
var assignmentBuilder = new EventAssignmentBuilder().WithName("EAB2").WithFormula(new ExplicitFormula("DontChange"));
assignmentBuilder.ObjectPath = new ObjectPath(new[] { "PATH" });
ehcStartEvent.AddAssignment(assignmentBuilder);
var ehcStopEvent = new EventBuilder().WithName(Converter321To331.EHCStopEvent);
var eabOldStop = new EventAssignmentBuilder().WithName("EAB1").WithFormula(new ConstantFormula(0));
eabOldStop.UseAsValue = false;
eabOldStop.ObjectPath = new ObjectPath(new[] { "Organism", "Gallbladder", "Gallbladder emptying rate" });
ehcStopEvent.AddAssignment(eabOldStop);
assignmentBuilder = new EventAssignmentBuilder().WithName("EAB2").WithFormula(new ExplicitFormula("DontChange"));
assignmentBuilder.ObjectPath = new ObjectPath(new[] { "PATH" });
ehcStopEvent.AddAssignment(assignmentBuilder);
eventGroup.Add(ehcStopEvent);
var protocolSchemaItem = new Container().WithName("ProtocolSchemaItem").WithParentContainer(eventGroup);
_drugMassParameter = new Parameter().WithName("DrugMass").WithParentContainer(protocolSchemaItem).WithValue(1);
applications = new EventGroupBuilder().WithName("Applications");
applications.Add(new Parameter().WithName("TotalDrugMass"));
_eventGroupBuildingBlock.Add(applications);
}
public void TestSerialization()
{
EventGroupBuilder x1 = CreateObject <EventGroupBuilder>().WithName("Evan.Builder");
x1.EventGroupType = "IV Bolus";
IFormula f1 = CreateObject <ConstantFormula>().WithValue(2.3);
IFormula f2 = CreateObject <ConstantFormula>().WithDimension(DimensionLength).WithValue(3.4);
IParameter p1 = CreateObject <Parameter>().WithName("Patricia").WithFormula(f1).WithValue(3.1);
IParameter p2 = CreateObject <Parameter>().WithName("Pascal").WithFormula(f1).WithValue(3.2);
x1.Add(p1);
x1.Add(p2);
EventBuilder eb1 = CreateObject <EventBuilder>().WithName("Eve.Builder").WithDimension(DimensionLength).WithFormula(f1);
EventBuilder eb2 = CreateObject <EventBuilder>().WithName("Eva.Builder").WithDimension(DimensionLength).WithFormula(f2);
eb2.OneTime = true;
x1.Add(eb1);
x1.Add(eb2);
ApplicationBuilder a1 = CreateObject <ApplicationBuilder>().WithName("App.Builder");
x1.Add(a1);
var applicationMoleculeBuilder = CreateObject <ApplicationMoleculeBuilder>().WithName("AppMolecule");
applicationMoleculeBuilder.Formula = f2;
applicationMoleculeBuilder.RelativeContainerPath = new ObjectPath(new[] { "A", "B" });
a1.AddMolecule(applicationMoleculeBuilder);
a1.AddTransport(CreateObject <TransportBuilder>().WithName("PassiveTranport").WithFormula(f1));
IEventGroupBuilder x2 = SerializeAndDeserialize(x1);
AssertForSpecs.AreEqualEventGroupBuilder(x1, x2);
}