public override IObservable <NeuropixDataFrame> Generate()
{
return(Observable.Create <NeuropixDataFrame>((observer, cancellationToken) =>
{
return Task.Factory.StartNew(() =>
{
var stopwatch = new Stopwatch();
using (var basestation = new NeuropixBasestation())
using (var sampleSignal = new ManualResetEvent(false))
{
basestation.Open(Path);
try
{
basestation.Mode = AsicMode.Recording;
basestation.DataMode = true;
var packets = new ElectrodePacket[BufferSize];
for (int i = 0; i < packets.Length; i++)
{
packets[i] = new ElectrodePacket();
}
while (!cancellationToken.IsCancellationRequested)
{
stopwatch.Restart();
for (int i = 0; i < packets.Length; i++)
{
if (!basestation.ReadElectrodeData(packets[i]))
{
observer.OnCompleted();
return;
}
}
var result = new NeuropixDataFrame(packets, 0);
observer.OnNext(result);
var frequency = Frequency;
var sampleInterval = frequency > 0 ? 1000.0 / Frequency : 0;
var dueTime = Math.Max(0, (sampleInterval * packets.Length * NeuropixDataFrame.SampleCount) - stopwatch.Elapsed.TotalMilliseconds);
if (dueTime > 0)
{
sampleSignal.WaitOne(TimeSpan.FromMilliseconds(dueTime));
}
}
}
finally { basestation.Close(); }
}
},
cancellationToken,
TaskCreationOptions.LongRunning,
TaskScheduler.Default);
}));
}
public override IObservable <NeuropixDataFrame> Generate()
{
return(Observable.Create <NeuropixDataFrame>((observer, cancellationToken) =>
{
return Task.Factory.StartNew(() =>
{
try
{
int rc = NeuropixAPI.openBS(3);
Console.WriteLine("Open basestation result: {0}", rc);
rc = NeuropixAPI.openProbe(3, 1);
Console.WriteLine("Open probe result: {0}", rc);
if (rc == 0)
{
rc = NeuropixAPI.init(3, 1);
Console.WriteLine("Init result: {0}", rc);
Console.WriteLine("Sleeping for {0} seconds", 2);
rc = NeuropixAPI.setTriggerInput(3, 0);
rc = NeuropixAPI.arm(3);
rc = NeuropixAPI.setSWTrigger(3);
int packetCounter = 0;
float bufferCapacity = 0;
var packets = new ElectrodePacket[1];
IntPtr requestedAmount = (IntPtr)packets.Length;
IntPtr actualAmount;
while (!cancellationToken.IsCancellationRequested)
{
rc = NeuropixAPI.readElectrodeData(3, 1, packets, out actualAmount, requestedAmount);
Console.WriteLine("Received: {0} samples", actualAmount);
//observer.OnNext(new NeuropixDataFrame(packets, 0));
for (int i = 0; i < actualAmount.ToInt32(); i++)
{
observer.OnNext(new NeuropixDataFrame(packets[i], 0));
}
}
Console.WriteLine("Closing basestation...");
rc = NeuropixAPI.closeBS(3);
Console.WriteLine("CloseBS result: {0}", rc);
}
}
catch (System.Runtime.InteropServices.SEHException ex)
{
Console.WriteLine(ex);
throw;
}
},
cancellationToken,
TaskCreationOptions.LongRunning,
TaskScheduler.Default);
}));
}
internal NeuropixDataFrame(ElectrodePacket packet, float bufferCapacity)
{
unsafe
{
var apData = new Mat(ElectrodePacket.PROBE_SUPERFRAMESIZE, ElectrodePacket.PROBE_CHANNEL_COUNT, Depth.S16, 1, (IntPtr)packet.apData);
ApData = new Mat(ElectrodePacket.PROBE_CHANNEL_COUNT, ElectrodePacket.PROBE_SUPERFRAMESIZE, Depth.S16, 1);
CV.Transpose(apData, ApData);
var lfpData = new Mat(1, ElectrodePacket.PROBE_CHANNEL_COUNT, Depth.S16, 1, (IntPtr)packet.lfpData);
LfpData = new Mat(ElectrodePacket.PROBE_CHANNEL_COUNT, 1, Depth.S16, 1);
CV.Transpose(lfpData, LfpData);
}
}
public NeuropixDataFrame(ElectrodePacket packet, float bufferCapacity)
{
var startTrigger = new Mat(1, SampleCount, Depth.U8, 1, packet.StartTrigger);
var synchronization = new Mat(1, SampleCount, Depth.U16, 1, packet.Synchronization);
var counters = new Mat(SampleCount, SampleCount + 1, Depth.S32, 1, packet.Counters);
var lfpData = new Mat(ChannelCount, 1, Depth.F32, 1, packet.LfpData);
var apData = new Mat(SampleCount, ChannelCount, Depth.F32, 1, packet.ApData);
StartTrigger = startTrigger.Clone();
Synchronization = synchronization.Clone();
Counters = Transpose(counters);
LfpData = lfpData.Clone();
ApData = Transpose(apData);
BufferCapacity = bufferCapacity;
}
public override IObservable <NeuropixDataFrame> Generate()
{
return(Observable.Create <NeuropixDataFrame>((observer, cancellationToken) =>
{
return Task.Factory.StartNew(() =>
{
try
{
using (var basestation = new NeuropixBasestation())
{
var version = basestation.GetAPIVersion();
Console.WriteLine("Neuropix API version: {0}.{1}", version.Major, version.Minor);
Console.WriteLine("Opening basestation data and configuration link...");
basestation.Open();
version = basestation.GetHardwareVersion();
Console.WriteLine("Neuropix FPGA bootcode version: {0}.{1}", version.Major, version.Minor);
version = basestation.GetBSVersion();
Console.WriteLine("Neuropix Basestation connect board version: {0}.{1}", version.Major, version.Minor);
var probeID = basestation.ReadID();
Console.WriteLine("Neuropix probe S/N: {0} Option {1}", probeID.SerialNumber, probeID.ProbeType);
Console.Write("Neuropix ADC calibration... ");
var comparatorCalibration = ComparatorCalibration;
var adcOffsetCalibration = AdcOffsetCalibration;
var adcSlopeCalibration = AdcSlopeCalibration;
if (!string.IsNullOrEmpty(comparatorCalibration) &&
!string.IsNullOrEmpty(adcOffsetCalibration) &&
!string.IsNullOrEmpty(adcSlopeCalibration))
{
basestation.ApplyAdcCalibrationFromCsv(comparatorCalibration, adcOffsetCalibration, adcSlopeCalibration);
}
else
{
basestation.ApplyAdcCalibrationFromEeprom();
}
Console.WriteLine("OK");
Console.WriteLine("Neuropix setting gain and filter bandwidth... ");
basestation.WriteAllAPGains(GainAP);
basestation.WriteAllLFPGains(GainLFP);
basestation.SetFilter(FilterBandwidth);
Console.Write("Neuropix Gain correction... ");
var gainCorrection = GainCorrection;
if (!string.IsNullOrEmpty(gainCorrection))
{
basestation.ApplyGainCalibrationFromCsv(gainCorrection);
}
//else basestation.ApplyGainCalibrationFromEeprom();
Console.WriteLine("OK");
basestation.LedOff(LedOff);
basestation.Mode = AsicMode.Recording;
basestation.DataMode = true;
basestation.TriggerMode = false;
basestation.SetNrst(false);
basestation.ResetDatapath();
var fileName = StreamingFileName;
if (!string.IsNullOrEmpty(fileName) && FileStreaming)
{
PathHelper.EnsureDirectory(fileName);
fileName = PathHelper.AppendSuffix(fileName, StreamingSuffix);
basestation.StartRecording(fileName);
}
Console.WriteLine("Neuropix recording armed.");
basestation.SetNrst(true);
basestation.NeuralStart();
Console.WriteLine("Neuropix recording start...");
int packetCounter = 0;
float bufferCapacity = 0;
var packet = new ElectrodePacket();
while (!cancellationToken.IsCancellationRequested)
{
if (packetCounter == 0)
{
bufferCapacity = basestation.FifoFilling;
}
basestation.ReadElectrodeData(packet);
var result = new NeuropixDataFrame(packet, bufferCapacity);
observer.OnNext(result);
packetCounter = (packetCounter + 1) % 50;
}
Console.WriteLine("Neuropix stop recording...");
if (!string.IsNullOrEmpty(fileName) && FileStreaming)
{
basestation.StopRecording();
}
basestation.Close();
}
}
catch (System.Runtime.InteropServices.SEHException ex)
{
Console.WriteLine(ex);
throw;
}
},
cancellationToken,
TaskCreationOptions.LongRunning,
TaskScheduler.Default);
}));
}
