private DoseResponseAndNonLinearRegressionAnalysisModel GetModelEquation(IDataset dataset)
{
var model = new DoseResponseAndNonLinearRegressionAnalysisModel(dataset)
{
AnalysisType = AnalysisOption.Equation,
Dose = null,
DoseScale = DoseScaleOption.Log10,
EDICCoeff = null,
EDICStartValue = null,
Equation = "y=mx+c",
EquationXAxis = "Dose1",
EquationYAxis = "Resp 1",
MaxCoeff = null,
MaxStartValue = null,
MinCoeff = null,
MinStartValue = null,
Offset = null,
QCDose = null,
QCResponse = null,
Response = null,
ResponseTransformation = "None",
SamplesResponse = null,
SlopeCoeff = null,
SlopeStartValue = null,
StartValues = "1,2,3"
};
return(model);
}
private DoseResponseAndNonLinearRegressionAnalysisModel GetModelFourParameter(IDataset dataset)
{
var model = new DoseResponseAndNonLinearRegressionAnalysisModel(dataset)
{
AnalysisType = AnalysisOption.FourParameter,
Dose = "Dose1",
DoseScale = DoseScaleOption.Log10,
EDICCoeff = 8m,
EDICStartValue = 9m,
Equation = null,
EquationXAxis = null,
EquationYAxis = null,
MaxCoeff = 4m,
MaxStartValue = 5m,
MinCoeff = 2m,
MinStartValue = 1m,
Offset = 1m,
QCDose = "QCDose1",
QCResponse = "QC Resp1",
Response = "Resp 1",
ResponseTransformation = "None",
SamplesResponse = "Sample 1",
SlopeCoeff = 6m,
SlopeStartValue = 7m,
StartValues = null
};
return(model);
}
public void GetCommandLineArguments_Equation_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
DoseResponseAndNonLinearRegressionAnalysisModel sut = GetModelEquation(GetDataset());
//Act
string result = sut.GetCommandLineArguments();
//Assert
Assert.Equal("Equation NULL None NULL NULL Log10 NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL NULL y=mx+c 1,2,3 Respivs_sp_ivs1 Dose1", result);
}
public void ScriptFileName_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
DoseResponseAndNonLinearRegressionAnalysisModel sut = new DoseResponseAndNonLinearRegressionAnalysisModel();
//Act
string result = sut.ScriptFileName;
//Assert
Assert.Equal("DoseResponseAndNonLinearRegressionAnalysis", result);
}
public void GetCommandLineArguments_FourParameter_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
DoseResponseAndNonLinearRegressionAnalysisModel sut = GetModelFourParameter(GetDataset());
//Act
string result = sut.GetCommandLineArguments();
//Assert
Assert.Equal("FourParameter Respivs_sp_ivs1 None Dose1 1 Log10 QCivs_sp_ivsResp1 QCDose1 Sampleivs_sp_ivs1 2 4 6 8 1 5 7 9 NULL NULL NULL NULL", result);
}
protected override ValidationResult IsValid(object value, ValidationContext validationContext)
{
DoseResponseAndNonLinearRegressionAnalysisModel model = (DoseResponseAndNonLinearRegressionAnalysisModel)validationContext.ObjectInstance;
if (value == null && model.AnalysisType == DoseResponseAndNonLinearRegressionAnalysisModel.AnalysisOption.FourParameter)
{
return(new ValidationResult(validationContext.DisplayName + " is a required variable."));
}
else
{
return(ValidationResult.Success);
}
}
public void TransformationsList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
DoseResponseAndNonLinearRegressionAnalysisModel sut = new DoseResponseAndNonLinearRegressionAnalysisModel();
//Act
IEnumerable <string> result = sut.TransformationsList;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"None", "Log10", "Loge", "Square Root", "ArcSine", "Rank"
}, result);
}
public void ExportData_Equation_ReturnsCorrectStringArray()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
Mock <IDataset> mockDataset = new Mock <IDataset>();
mockDataset.Setup(x => x.DatasetID).Returns(It.IsAny <int>);
mockDataset.Setup(x => x.DatasetToDataTable()).Returns(GetTestDataTable());
DoseResponseAndNonLinearRegressionAnalysisModel sut = GetModelEquation(mockDataset.Object);
//Act
string[] result = sut.ExportData();
//Assert
Assert.Equal("Respivs_sp_ivs1,Dose1", result[0]);
Assert.Equal(19, result.Count());
Assert.StartsWith("0.971844660194175,1", result[15]);
}
public void ExportData_FourParameter_ReturnsCorrectStringArray()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
Mock <IDataset> mockDataset = new Mock <IDataset>();
mockDataset.Setup(x => x.DatasetID).Returns(It.IsAny <int>);
mockDataset.Setup(x => x.DatasetToDataTable()).Returns(GetTestDataTable());
DoseResponseAndNonLinearRegressionAnalysisModel sut = GetModelFourParameter(mockDataset.Object);
//Act
string[] result = sut.ExportData();
//Assert
Assert.Equal("Respivs_sp_ivs1,Dose1,QCivs_sp_ivsResp1,QCDose1,Sampleivs_sp_ivs1", result[0]);
Assert.Equal(19, result.Count());
Assert.StartsWith("0.856310679611651,0.1", result[12]);
}
public void GetArguments_FourParameter_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
DoseResponseAndNonLinearRegressionAnalysisModel sut = GetModelFourParameter(GetDataset());
//Act
List <Argument> result = sut.GetArguments().ToList();
//Assert
var responses = result.Single(x => x.Name == "AnalysisType");
Assert.Equal("FourParameter", responses.Value);
var dose = result.Single(x => x.Name == "Dose");
Assert.Equal("Dose1", dose.Value);
var doseScale = result.Single(x => x.Name == "DoseScale");
Assert.Equal("Log10", doseScale.Value);
var edicCoeff = result.Single(x => x.Name == "EDICCoeff");
Assert.Equal("8", edicCoeff.Value);
var edicStartValue = result.Single(x => x.Name == "EDICStartValue");
Assert.Equal("9", edicStartValue.Value);
var equation = result.Single(x => x.Name == "Equation");
Assert.Null(equation.Value);
var equationXAxis = result.Single(x => x.Name == "EquationXAxis");
Assert.Null(equationXAxis.Value);
var equationYAxis = result.Single(x => x.Name == "EquationYAxis");
Assert.Null(equationYAxis.Value);
var maxCoeff = result.Single(x => x.Name == "MaxCoeff");
Assert.Equal("4", maxCoeff.Value);
var maxStartValue = result.Single(x => x.Name == "MaxStartValue");
Assert.Equal("5", maxStartValue.Value);
var minCoeff = result.Single(x => x.Name == "MinCoeff");
Assert.Equal("2", minCoeff.Value);
var minStartValue = result.Single(x => x.Name == "MinStartValue");
Assert.Equal("1", minStartValue.Value);
var offset = result.Single(x => x.Name == "Offset");
Assert.Equal("1", offset.Value);
var qcDose = result.Single(x => x.Name == "QCDose");
Assert.Equal("QCDose1", qcDose.Value);
var qcResponse = result.Single(x => x.Name == "QCResponse");
Assert.Equal("QC Resp1", qcResponse.Value);
var response = result.Single(x => x.Name == "Response");
Assert.Equal("Resp 1", response.Value);
var responseTransformation = result.Single(x => x.Name == "ResponseTransformation");
Assert.Equal("None", responseTransformation.Value);
var samplesResponse = result.Single(x => x.Name == "SamplesResponse");
Assert.Equal("Sample 1", samplesResponse.Value);
var slopeCoeff = result.Single(x => x.Name == "SlopeCoeff");
Assert.Equal("6", slopeCoeff.Value);
var slopeStartValue = result.Single(x => x.Name == "SlopeStartValue");
Assert.Equal("7", slopeStartValue.Value);
var startValues = result.Single(x => x.Name == "StartValues");
Assert.Null(startValues.Value);
}
public void LoadArguments_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
DoseResponseAndNonLinearRegressionAnalysisModel sut = new DoseResponseAndNonLinearRegressionAnalysisModel(GetDataset());
List <Argument> arguments = new List <Argument>();
arguments.Add(new Argument {
Name = "AnalysisType", Value = "FourParameter"
});
arguments.Add(new Argument {
Name = "Dose", Value = "Dose1"
});
arguments.Add(new Argument {
Name = "DoseScale", Value = "Log10"
});
arguments.Add(new Argument {
Name = "EDICCoeff", Value = "8"
});
arguments.Add(new Argument {
Name = "EDICStartValue", Value = "9"
});
arguments.Add(new Argument {
Name = "Equation", Value = "y=mx+c"
});
arguments.Add(new Argument {
Name = "EquationXAxis", Value = "Resp2"
});
arguments.Add(new Argument {
Name = "EquationYAxis", Value = "Dose2"
});
arguments.Add(new Argument {
Name = "MaxCoeff", Value = "4"
});
arguments.Add(new Argument {
Name = "MaxStartValue", Value = "5"
});
arguments.Add(new Argument {
Name = "MinCoeff", Value = "2"
});
arguments.Add(new Argument {
Name = "MinStartValue", Value = "1"
});
arguments.Add(new Argument {
Name = "Offset", Value = "1"
});
arguments.Add(new Argument {
Name = "QCDose", Value = "QCDose1"
});
arguments.Add(new Argument {
Name = "QCResponse", Value = "QC Resp1"
});
arguments.Add(new Argument {
Name = "Response", Value = "Resp 1"
});
arguments.Add(new Argument {
Name = "ResponseTransformation", Value = "None"
});
arguments.Add(new Argument {
Name = "SamplesResponse", Value = "Sample 1"
});
arguments.Add(new Argument {
Name = "SlopeCoeff", Value = "6"
});
arguments.Add(new Argument {
Name = "SlopeStartValue", Value = "7"
});
arguments.Add(new Argument {
Name = "StartValues", Value = "1,2,3"
});
Assert.Equal(21, arguments.Count);
//Act
sut.LoadArguments(arguments);
//Assert
Assert.Equal("FourParameter", sut.AnalysisType.ToString());
Assert.Equal("Dose1", sut.Dose);
Assert.Equal("Log10", sut.DoseScale.ToString());
Assert.Equal(8, sut.EDICCoeff);
Assert.Equal(9, sut.EDICStartValue);
Assert.Equal("y=mx+c", sut.Equation);
Assert.Equal("Resp2", sut.EquationXAxis);
Assert.Equal("Dose2", sut.EquationYAxis);
Assert.Equal(4, sut.MaxCoeff);
Assert.Equal(1, sut.MinStartValue);
Assert.Equal(1, sut.Offset);
Assert.Equal("QCDose1", sut.QCDose);
Assert.Equal("QC Resp1", sut.QCResponse);
Assert.Equal("Resp 1", sut.Response);
Assert.Equal("None", sut.ResponseTransformation);
Assert.Equal("Sample 1", sut.SamplesResponse);
Assert.Equal(6, sut.SlopeCoeff);
Assert.Equal(7, sut.SlopeStartValue);
Assert.Equal("1,2,3", sut.StartValues);
}
public async Task <IActionResult> DoseResponseAndNonLinearRegressionAnalysis(DoseResponseAndNonLinearRegressionAnalysisModel model, bool ignoreWarnings)
{
return(await RunAnalysis(model, ignoreWarnings));
}
public DoseResponseAndNonLinearRegressionAnalysisValidator(DoseResponseAndNonLinearRegressionAnalysisModel drnlr)
: base(drnlr.DataTable)
{
drnlrVariables = drnlr;
}