public ActionResult Index(
OrderTransformation[] transformationsSequence,
int iterationsCount,
string[] customSequences,
bool localFile,
HttpPostedFileBase[] file)
{
return(CreateTask(() =>
{
int sequencesCount = localFile ? Request.Files.Count : customSequences.Length;
var sourceSequences = new string[sequencesCount];
var sequences = new Chain[sequencesCount];
var names = new string[sequencesCount];
for (int i = 0; i < sequencesCount; i++)
{
if (localFile)
{
var sequenceStream = FileHelper.GetFileStream(file[i]);
var fastaSequence = NcbiHelper.GetFastaSequence(sequenceStream);
sourceSequences[i] = fastaSequence.ConvertToString();
names[i] = fastaSequence.ID;
}
else
{
sourceSequences[i] = customSequences[i];
names[i] = $"Custom sequence {i + 1}. Length: {customSequences[i].Length}";
}
}
for (int k = 0; k < sequencesCount; k++)
{
sequences[k] = new Chain(sourceSequences[k]);
for (int j = 0; j < iterationsCount; j++)
{
for (int i = 0; i < transformationsSequence.Length; i++)
{
sequences[k] = transformationsSequence[i] == OrderTransformation.Dissimilar
? DissimilarChainFactory.Create(sequences[k])
: HighOrderFactory.Create(sequences[k], EnumExtensions.GetLink(transformationsSequence[i]));
}
}
}
var transformations = transformationsSequence.Select(ts => ts.GetDisplayValue());
var result = new Dictionary <string, object>
{
{ "names", names },
{ "sequences", sequences.Select((s, i) => new { name = names[i], value = s.ToString(" ") }).ToArray() },
{ "transformationsList", transformations },
{ "iterationsCount", iterationsCount }
};
return new Dictionary <string, string> {
{ "data", JsonConvert.SerializeObject(result) }
};
}));
}
private OrderTransformationResult TransformOrder(OrderTransformation transformationType, int id)
{
var transformationResult = new OrderTransformationResult();
Chain chain = transformationType == OrderTransformation.Dissimilar
? DissimilarChainFactory.Create(new BaseChain(Orders[id]))
: HighOrderFactory.Create(new Chain(Orders[id]), transformationType.GetLink());
for (int i = 0; i < Orders.Count; i++)
{
if (Orders[i].SequenceEqual(chain.Building))
{
transformationResult.OrderId = i;
transformationResult.Transformation = transformationType.GetDisplayValue();
break;
}
}
return(transformationResult);
}
public ActionResult Index(long matterId, OrderTransformation[] transformationsSequence, int iterationsCount)
{
return(CreateTask(() =>
{
var sequenceId = db.CommonSequence.Single(c => c.MatterId == matterId).Id;
var sequence = commonSequenceRepository.GetLibiadaChain(sequenceId);
for (int j = 0; j < iterationsCount; j++)
{
for (int i = 0; i < transformationsSequence.Length; i++)
{
sequence = transformationsSequence[i] == OrderTransformation.Dissimilar ? DissimilarChainFactory.Create(sequence)
: HighOrderFactory.Create(sequence, EnumExtensions.GetLink(transformationsSequence[i]));
}
}
var transformations = new Dictionary <int, string>();
for (int i = 0; i < transformationsSequence.Length; i++)
{
transformations.Add(i, transformationsSequence[i].GetDisplayValue());
}
var result = new Dictionary <string, object>
{
{ "chain", sequence.ToString(" ") },
{ "transformationsList", transformations },
{ "iterationsCount", iterationsCount }
};
return new Dictionary <string, object>
{
{ "data", JsonConvert.SerializeObject(result) }
};
}));
}
public ActionResult Index(long matterId, OrderTransformation[] transformationsSequence, int iterationsCount)
{
return(CreateTask(() =>
{
var sequenceId = db.CommonSequence.Single(c => c.MatterId == matterId).Id;
var sequence = commonSequenceRepository.GetLibiadaChain(sequenceId);
int loopIteration = -1;
int lastIteration = -1;
var transformationsResult = new List <int[]>();
transformationsResult.Add(sequence.Building);
for (int j = 0; j < iterationsCount; j++)
{
for (int i = 0; i < transformationsSequence.Length; i++)
{
sequence = transformationsSequence[i] == OrderTransformation.Dissimilar ? DissimilarChainFactory.Create(sequence)
: HighOrderFactory.Create(sequence, EnumExtensions.GetLink(transformationsSequence[i]));
if (transformationsResult.Any(tr => tr.SequenceEqual(sequence.Building)))
{
loopIteration = transformationsResult.FindIndex(tr => tr.SequenceEqual(sequence.Building)) + 1;
lastIteration = j + 1;
goto exitLoops;
}
transformationsResult.Add(sequence.Building);
}
}
exitLoops:
var transformations = new Dictionary <int, string>();
for (int i = 0; i < transformationsSequence.Length; i++)
{
transformations.Add(i, transformationsSequence[i].GetDisplayValue());
}
var result = new Dictionary <string, object>
{
{ "chain", sequence },
{ "transformationsList", transformations },
{ "iterationsCount", iterationsCount },
{ "transformationsResult", transformationsResult },
{ "loopIteration", loopIteration },
{ "lastIteration", lastIteration }
};
return new Dictionary <string, object>
{
{ "data", JsonConvert.SerializeObject(result) }
};
}));
}
public ActionResult Index(
OrderTransformation[] transformationsSequence,
int iterationsCount,
short[] characteristicLinkIds,
string[] customSequences,
bool localFile,
HttpPostedFileBase[] file)
{
return(CreateTask(() =>
{
var characteristicTypeLinkRepository = FullCharacteristicRepository.Instance;
int sequencesCount = localFile ? Request.Files.Count : customSequences.Length;
var sequences = new string[sequencesCount];
var sequencesNames = new string[sequencesCount];
for (int i = 0; i < sequencesCount; i++)
{
if (localFile)
{
Stream sequenceStream = FileHelper.GetFileStream(file[i]);
ISequence fastaSequence = NcbiHelper.GetFastaSequence(sequenceStream);
sequences[i] = fastaSequence.ConvertToString();
sequencesNames[i] = fastaSequence.ID;
}
else
{
sequences[i] = customSequences[i];
sequencesNames[i] = $"Custom sequence {i + 1}. Length: {customSequences[i].Length}";
}
}
var sequencesCharacteristics = new SequenceCharacteristics[sequences.Length];
for (int j = 0; j < sequences.Length; j++)
{
var characteristics = new double[characteristicLinkIds.Length];
for (int k = 0; k < characteristicLinkIds.Length; k++)
{
var sequence = new Chain(sequences[j]);
for (int l = 0; l < iterationsCount; l++)
{
for (int w = 0; w < transformationsSequence.Length; w++)
{
sequence = transformationsSequence[w] == OrderTransformation.Dissimilar ? DissimilarChainFactory.Create(sequence)
: HighOrderFactory.Create(sequence, EnumExtensions.GetLink(transformationsSequence[w]));
}
}
Link link = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkIds[k]);
FullCharacteristic characteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkIds[k]);
IFullCalculator calculator = FullCalculatorsFactory.CreateCalculator(characteristic);
characteristics[k] = calculator.Calculate(sequence, link);
}
sequencesCharacteristics[j] = new SequenceCharacteristics
{
MatterName = sequencesNames[j],
Characteristics = characteristics
};
}
string[] characteristicNames = characteristicLinkIds.Select(c => characteristicTypeLinkRepository.GetCharacteristicName(c)).ToArray();
var characteristicsList = new SelectListItem[characteristicLinkIds.Length];
for (int i = 0; i < characteristicNames.Length; i++)
{
characteristicsList[i] = new SelectListItem
{
Value = i.ToString(),
Text = characteristicNames[i],
Selected = false
};
}
var transformations = new Dictionary <int, string>();
for (int i = 0; i < transformationsSequence.Length; i++)
{
transformations.Add(i, transformationsSequence[i].GetDisplayValue());
}
var result = new Dictionary <string, object>
{
{ "characteristics", sequencesCharacteristics },
{ "characteristicNames", characteristicNames },
{ "characteristicsList", characteristicsList },
{ "transformationsList", transformations },
{ "iterationsCount", iterationsCount }
};
return new Dictionary <string, object>
{
{ "data", JsonConvert.SerializeObject(result) }
};
}));
}
public ActionResult Index(
long[] matterIds,
OrderTransformation[] transformationsSequence,
int iterationsCount,
short[] characteristicLinkIds,
Notation[] notations,
Language[] languages,
Translator?[] translators,
PauseTreatment[] pauseTreatments,
bool[] sequentialTransfers)
{
return(CreateTask(() =>
{
var db = new LibiadaWebEntities();
var characteristicTypeLinkRepository = FullCharacteristicRepository.Instance;
var commonSequenceRepository = new CommonSequenceRepository(db);
var mattersCharacteristics = new object[matterIds.Length];
matterIds = matterIds.OrderBy(m => m).ToArray();
Dictionary <long, Matter> matters = db.Matter.Where(m => matterIds.Contains(m.Id)).ToDictionary(m => m.Id);
for (int i = 0; i < matterIds.Length; i++)
{
long matterId = matterIds[i];
var characteristics = new double[characteristicLinkIds.Length];
for (int k = 0; k < characteristicLinkIds.Length; k++)
{
Notation notation = notations[k];
long sequenceId;
switch (matters[matterId].Nature)
{
case Nature.Literature:
Language language = languages[k];
Translator translator = translators[k] ?? Translator.NoneOrManual;
sequenceId = db.LiteratureSequence.Single(l => l.MatterId == matterId &&
l.Notation == notation &&
l.Language == language &&
l.Translator == translator).Id;
break;
case Nature.Music:
PauseTreatment pauseTreatment = pauseTreatments[k];
bool sequentialTransfer = sequentialTransfers[k];
sequenceId = db.MusicSequence.Single(m => m.MatterId == matterId &&
m.Notation == notation &&
m.PauseTreatment == pauseTreatment &&
m.SequentialTransfer == sequentialTransfer).Id;
break;
default:
sequenceId = db.CommonSequence.Single(c => c.MatterId == matterId && c.Notation == notation).Id;
break;
}
Chain sequence = commonSequenceRepository.GetLibiadaChain(sequenceId);
for (int l = 0; l < iterationsCount; l++)
{
for (int j = 0; j < transformationsSequence.Length; j++)
{
sequence = transformationsSequence[j] == OrderTransformation.Dissimilar ? DissimilarChainFactory.Create(sequence)
: HighOrderFactory.Create(sequence, EnumExtensions.GetLink(transformationsSequence[j]));
}
}
int characteristicLinkId = characteristicLinkIds[k];
Link link = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkId);
FullCharacteristic characteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkId);
IFullCalculator calculator = FullCalculatorsFactory.CreateCalculator(characteristic);
characteristics[k] = calculator.Calculate(sequence, link);
}
mattersCharacteristics[i] = new { matterName = matters[matterId].Name, characteristics };
}
var characteristicNames = new string[characteristicLinkIds.Length];
for (int k = 0; k < characteristicLinkIds.Length; k++)
{
characteristicNames[k] = characteristicTypeLinkRepository.GetCharacteristicName(characteristicLinkIds[k], notations[k]);
}
var characteristicsList = new SelectListItem[characteristicLinkIds.Length];
for (int i = 0; i < characteristicNames.Length; i++)
{
characteristicsList[i] = new SelectListItem
{
Value = i.ToString(),
Text = characteristicNames[i],
Selected = false
};
}
var transformations = new Dictionary <int, string>();
for (int i = 0; i < transformationsSequence.Length; i++)
{
transformations.Add(i, transformationsSequence[i].GetDisplayValue());
}
var result = new Dictionary <string, object>
{
{ "characteristics", mattersCharacteristics },
{ "characteristicNames", characteristicNames },
{ "characteristicsList", characteristicsList },
{ "transformationsList", transformations },
{ "iterationsCount", iterationsCount }
};
return new Dictionary <string, object>
{
{ "data", JsonConvert.SerializeObject(result) }
};
}));
}
public ActionResult Index(
long[] matterIds,
OrderTransformation[] transformationsSequence,
int iterationsCount,
short characteristicLinkId,
Notation notation,
Language?language,
Translator?translator,
PauseTreatment?pauseTreatment,
bool?sequentialTransfer)
{
return(CreateTask(() =>
{
var db = new LibiadaWebEntities();
var characteristicTypeLinkRepository = FullCharacteristicRepository.Instance;
var commonSequenceRepository = new CommonSequenceRepository(db);
var mattersCharacteristics = new object[matterIds.Length];
matterIds = matterIds.OrderBy(m => m).ToArray();
Dictionary <long, Matter> matters = db.Matter.Where(m => matterIds.Contains(m.Id)).ToDictionary(m => m.Id);
for (int i = 0; i < matterIds.Length; i++)
{
long matterId = matterIds[i];
long sequenceId;
switch (matters[matterId].Nature)
{
case Nature.Literature:
sequenceId = db.LiteratureSequence.Single(l => l.MatterId == matterId &&
l.Notation == notation &&
l.Language == language &&
l.Translator == translator).Id;
break;
case Nature.Music:
sequenceId = db.MusicSequence.Single(m => m.MatterId == matterId &&
m.Notation == notation &&
m.PauseTreatment == pauseTreatment &&
m.SequentialTransfer == sequentialTransfer).Id;
break;
default:
sequenceId = db.CommonSequence.Single(c => c.MatterId == matterId && c.Notation == notation).Id;
break;
}
Link link = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkId);
FullCharacteristic characteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkId);
IFullCalculator calculator = FullCalculatorsFactory.CreateCalculator(characteristic);
Chain sequence = commonSequenceRepository.GetLibiadaChain(sequenceId);
var characteristics = new double[transformationsSequence.Length * iterationsCount];
for (int j = 0; j < iterationsCount; j++)
{
for (int k = 0; k < transformationsSequence.Length; k++)
{
sequence = transformationsSequence[k] == OrderTransformation.Dissimilar ? DissimilarChainFactory.Create(sequence)
: HighOrderFactory.Create(sequence, transformationsSequence[k].GetLink());
characteristics[transformationsSequence.Length * j + k] = calculator.Calculate(sequence, link);
}
}
mattersCharacteristics[i] = new { matterName = matters[matterId].Name, characteristics };
}
string characteristicName = characteristicTypeLinkRepository.GetCharacteristicName(characteristicLinkId, notation);
var result = new Dictionary <string, object>
{
{ "characteristics", mattersCharacteristics },
{ "characteristicName", characteristicName },
{ "transformationsList", transformationsSequence.Select(ts => ts.GetDisplayValue()) },
{ "iterationsCount", iterationsCount }
};
return new Dictionary <string, object>
{
{ "data", JsonConvert.SerializeObject(result) }
};
}));
}
public ActionResult Index(
long[] matterIds,
OrderTransformation[] transformationsSequence,
int iterationsCount,
short[] characteristicLinkIds,
Notation[] notations,
Language?[] languages,
Translator?[] translators,
PauseTreatment?[] pauseTreatments,
bool?[] sequentialTransfers,
ImageOrderExtractor?[] trajectories)
{
return(CreateTask(() =>
{
Dictionary <long, string> mattersNames = Cache.GetInstance().Matters.Where(m => matterIds.Contains(m.Id)).ToDictionary(m => m.Id, m => m.Name);
Chain[][] sequences = new Chain[matterIds.Length][];
using (var db = new LibiadaWebEntities())
{
var commonSequenceRepository = new CommonSequenceRepository(db);
long[][] sequenceIds = commonSequenceRepository.GetSequenceIds(matterIds,
notations,
languages,
translators,
pauseTreatments,
sequentialTransfers,
trajectories);
for (int i = 0; i < matterIds.Length; i++)
{
sequences[i] = new Chain[characteristicLinkIds.Length];
for (int j = 0; j < characteristicLinkIds.Length; j++)
{
sequences[i][j] = commonSequenceRepository.GetLibiadaChain(sequenceIds[i][j]);
}
}
}
var characteristicTypeLinkRepository = FullCharacteristicRepository.Instance;
var sequencesCharacteristics = new SequenceCharacteristics[matterIds.Length];
matterIds = matterIds.OrderBy(m => m).ToArray();
for (int i = 0; i < matterIds.Length; i++)
{
long matterId = matterIds[i];
var characteristics = new double[characteristicLinkIds.Length];
for (int j = 0; j < characteristicLinkIds.Length; j++)
{
Notation notation = notations[j];
Chain sequence = sequences[i][j];
for (int l = 0; l < iterationsCount; l++)
{
for (int k = 0; k < transformationsSequence.Length; k++)
{
sequence = transformationsSequence[k] == OrderTransformation.Dissimilar ? DissimilarChainFactory.Create(sequence)
: HighOrderFactory.Create(sequence, EnumExtensions.GetLink(transformationsSequence[k]));
}
}
int characteristicLinkId = characteristicLinkIds[j];
Link link = characteristicTypeLinkRepository.GetLinkForCharacteristic(characteristicLinkId);
FullCharacteristic characteristic = characteristicTypeLinkRepository.GetCharacteristic(characteristicLinkId);
IFullCalculator calculator = FullCalculatorsFactory.CreateCalculator(characteristic);
characteristics[j] = calculator.Calculate(sequence, link);
}
sequencesCharacteristics[i] = new SequenceCharacteristics
{
MatterName = mattersNames[matterId],
Characteristics = characteristics
};
}
var characteristicNames = new string[characteristicLinkIds.Length];
var characteristicsList = new SelectListItem[characteristicLinkIds.Length];
for (int k = 0; k < characteristicLinkIds.Length; k++)
{
characteristicNames[k] = characteristicTypeLinkRepository.GetCharacteristicName(characteristicLinkIds[k], notations[k]);
characteristicsList[k] = new SelectListItem
{
Value = k.ToString(),
Text = characteristicNames[k],
Selected = false
};
}
var transformations = transformationsSequence.Select(ts => ts.GetDisplayValue());
var result = new Dictionary <string, object>
{
{ "characteristics", sequencesCharacteristics },
{ "characteristicNames", characteristicNames },
{ "characteristicsList", characteristicsList },
{ "transformationsList", transformations },
{ "iterationsCount", iterationsCount }
};
return new Dictionary <string, string> {
{ "data", JsonConvert.SerializeObject(result) }
};
}));
}