private void FeedLocusFastaDictPex(DirectoryClassDescription myDir, FileInfo[] resultFilteredFiles)
{
foreach (FileInfo fi in resultFilteredFiles)
{
Console.WriteLine("Parsing " + fi.FullName);
ResultPckg2 thisPckg = ResultPckg2.DeserializeResultPackage(fi.FullName);
myResultPackages.Add(new FileInfoResultPackage(fi, thisPckg, myDir.ClassLabel));
foreach (FastaItem fastaItem in thisPckg.MyFasta)
{
if (!locusFastaDict.ContainsKey(fastaItem.SequenceIdentifier))
{
locusFastaDict.Add(fastaItem.SequenceIdentifier, fastaItem.Sequence);
}
}
}
}
private void FeedLocusFastaDictSEPro(DirectoryClassDescription myDir, FileInfo[] resultFilteredFiles)
{
foreach (FileInfo fi in resultFilteredFiles)
{
Console.WriteLine("Parsing " + fi.FullName);
SEPRPackage.ResultPackage thisPckg = SEPRPackage.ResultPackage.Load(fi.FullName);
myResultPackages.Add(new FileInfoResultPackage(fi, thisPckg, myDir.ClassLabel));
foreach (MyProtein protein in thisPckg.MyProteins.MyProteinList)
{
if (!locusFastaDict.ContainsKey(protein.Locus))
{
locusFastaDict.Add(protein.Locus, protein.Sequence);
}
}
}
}
public void ParseDir(DirectoryClassDescription dir)
{
MyDirectoryDescriptionDictionary = new List <DirectoryClassDescription>();
MyDirectoryDescriptionDictionary.Add(dir);
MyResultPackages = new List <ResultEntry>();
FileInfo[] fileInfo = new DirectoryInfo(dir.MyDirectoryFullName).GetFiles("*.sepr", SearchOption.AllDirectories);
foreach (FileInfo file in fileInfo)
{
//First lets unserialize the object
ResultPackage rp = ResultPackage.Load(file.FullName);
//Lets free um some ram
foreach (SQTScan s in rp.MyProteins.AllSQTScans)
{
s.MSLight = null;
}
MyResultPackages.Add(new ResultEntry(rp, file, dir.ClassLabel));
}
}
