public void PearsonTest1()
{
var r1 = Degradome.CorrelationTest(
"F:\\JICWork\\Degradome_WT\\Degrad_wt_1_ATCACG_R1_T1\\results.dist.txt",
"F:\\JICWork\\Degradome_WT\\Degrad_wt_1_ATCACG_R1_T2\\results.dist.txt",
"F:\\JICWork\\Degradome_WT\\wt1.txt"
);
var r2 = Degradome.CorrelationTest(
"F:\\JICWork\\Degradome_WT\\Degrad_wt_2_ACAGTG_R1_T1\\results.dist.txt",
"F:\\JICWork\\Degradome_WT\\Degrad_wt_2_ACAGTG_R1_T2\\results.dist.txt",
"F:\\JICWork\\Degradome_WT\\wt2.txt"
);
var r3 = Degradome.CorrelationTest(
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_1_GAGTGG_R1_T1\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_1_GAGTGG_R1_T2\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\XRN4_1.txt"
);
var r4 = Degradome.CorrelationTest(
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_2_ATTCCT_R1_T1\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_2_ATTCCT_R1_T2\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\XRN4_2.txt"
);
Debug.Print(r1.ToString());
Debug.Print(r2.ToString());
Debug.Print(r3.ToString());
Debug.Print(r4.ToString());
Debug.Print("done");
}
private void testButton_Click(object sender, EventArgs e)
{
float result = Degradome.CorrelationTest(
degradomeFile1TextBox.Text,
degradomeFile2TextBox.Text,
rpkmFileTextBox.Text);
resultTextBox.Text = result.ToString();
}
public void PearsonTest3()
{
var r1 = Degradome.CorrelationTest(
"F:\\JICWork\\Degradome_WT\\degrad_wt.txt",
"F:\\JICWork\\Degradome_XRN4\\degrad_XRN4.txt",
"F:\\JICWork\\Degradome_WT\\cor_wt_xrn4.txt"
);
Debug.Print(r1.ToString());
Debug.Print("done");
}
public void MergeFileTest2()
{
Degradome.Merge(
"F:\\JICWork\\Degradome_WT\\degrad_wt_1.txt",
"F:\\JICWork\\Degradome_WT\\Degrad_wt_2.txt",
"F:\\JICWork\\Degradome_WT\\degrad_wt.txt"
);
Degradome.Merge(
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_1.txt",
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_2.txt",
"F:\\JICWork\\Degradome_XRN4\\degrad_XRN4.txt"
);
}
public void MergeFileTest()
{
//Degradome.Merge(
// "F:\\JICWork\\Degradome_WT\\Degrad_wt_1_ATCACG_R1_T1\\results.dist.txt",
// "F:\\JICWork\\Degradome_WT\\Degrad_wt_1_ATCACG_R1_T2\\results.dist.txt",
// "F:\\JICWork\\Degradome_WT\\degrad_wt_1.txt"
// );
Degradome.Merge(
"F:\\JICWork\\Degradome_WT\\Degrad_wt_2_ACAGTG_R1_T1\\results.dist.txt",
"F:\\JICWork\\Degradome_WT\\Degrad_wt_2_ACAGTG_R1_T2\\results.dist.txt",
"F:\\JICWork\\Degradome_WT\\degrad_wt_2.txt"
);
Degradome.Merge(
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_1_GAGTGG_R1_T1\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_1_GAGTGG_R1_T2\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\degrad_XRN4_1.txt"
);
Degradome.Merge(
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_2_ATTCCT_R1_T1\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_2_ATTCCT_R1_T2\\results.dist.txt",
"F:\\JICWork\\Degradome_XRN4\\Degrad_XRN4_2.txt"
);
}
private void toolStripMenuItem3_Click(object sender, EventArgs e)
{
Degradome.ToCleavageEfficiency();
}
private void mergeButton_Click(object sender, EventArgs e)
{
Degradome.Merge(degradomeFile1TextBox.Text,
degradomeFile2TextBox.Text,
mergedFileTextBox.Text);
}
