public void test1(string settingsFileName)
{
var methodName = MethodBase.GetCurrentMethod().Name;
var deconToolsParamFile = Test.GetTestFile(methodName, settingsFileName);
Console.WriteLine("Reading " + deconToolsParamFile.FullName);
var loader = new DeconToolsFilterLoader(deconToolsParamFile.FullName);
loader.DisplayFilters();
var testFeature1 = new MSFeature
{
Abundance = 16117,
DriftTime = 20.584f,
Fit = 0.0264f,
Fwhm = 0.0689f,
InterferenceScore = 0,
MassMonoisotopic = 2902.229,
Mz = 726.5646,
ScanIMS = 126,
ScanLC = 384,
Charge = 4
};
var isValid = DeconToolsFilterUtil.IsValidMSFeature(testFeature1, loader.DeconToolsFilterList);
Assert.IsTrue(isValid);
//384,126,4,16117,726.5646,0.0264,2904.08709,2902.229,2903.23217,0.0689,55.2,9527,14254,0,0,20.584,,0
}
private bool PassesFilters(MSFeature msFeature)
{
if (ColumnMap.ContainsKey("MSFeature.Frame"))
{
if (msFeature.ScanLC < Settings.ScanLCMin || msFeature.ScanLC > Settings.ScanLCMax)
{
return(false);
}
}
if (ColumnMap.ContainsKey("MSFeature.ScanIMS"))
{
if (msFeature.ScanIMS < Settings.ScanIMSMin || msFeature.ScanIMS > Settings.ScanIMSMax)
{
return(false);
}
}
if (ColumnMap.ContainsKey("MSFeature.MassMonoisotopic"))
{
if (msFeature.MassMonoisotopic < Settings.MassMonoisotopicStart || msFeature.MassMonoisotopic > Settings.MassMonoisotopicEnd)
{
return(false);
}
}
if (ColumnMap.ContainsKey("MSFeature.ErrorFlag"))
{
if (msFeature.ErrorFlag == 1)
{
return(false);
}
}
var deconToolsFilterTableIsBeingUsed = (Settings.FilterUsingHardCodedFilters && Settings.DeconToolsFilterList != null && Settings.DeconToolsFilterList.Count > 0);
if (deconToolsFilterTableIsBeingUsed)
{
if (!DeconToolsFilterUtil.IsValidMSFeature(msFeature, Settings.DeconToolsFilterList))
{
return(false);
}
}
else
{
if (ColumnMap.ContainsKey("MSFeature.Fit"))
{
if (msFeature.Fit > Settings.FitMax)
{
return(false);
}
}
if (ColumnMap.ContainsKey("MSFeature.InterferenceScore"))
{
if (msFeature.InterferenceScore > Settings.InterferenceScoreMax)
{
return(false);
}
}
if (ColumnMap.ContainsKey("MSFeature.Abundance"))
{
if (msFeature.Abundance < Settings.IntensityMin)
{
return(false);
}
}
}
return(true);
}
