public void GraphBuildingTest()
{
String molecule = "АГЦЦГГУАП";
String[] fragmentsArray = { "АГЦЦ", "ЦГГУ", "ЦГГУ", "ГГУЦ", "ГУА" };
DNAGraph graph = new DNAGraph(molecule, fragmentsArray);
var verticlesList = graph.VerticleList;
var verticlesNeighboursFragments = new List <List <String> >()
{
new List <String>()
{
"ЦГГУ"
},
new List <String>()
{
"ГУА"
},
new List <String>(),
new List <String>()
};
for (var i = 0; i < verticlesList.Count; ++i)
{
var neighboursFragments = new List <String>();
foreach (var neighbour in verticlesList[i].GetNeighbours())
{
neighboursFragments.Add(neighbour.Fragment);
}
Assert.IsTrue(verticlesNeighboursFragments[i].SequenceEqual(neighboursFragments));
}
}
public void PathFindingTest()
{
String molecule = "АГЦЦГГУААЦЦ";
String[] fragmentsArray = { "АГЦЦ", "ЦГГУ", "ГГУАА", "УААЦЦ" };
DNAGraph graph = new DNAGraph(molecule, fragmentsArray);
List <List <String> > paths = graph.GetPaths();
List <String> path1 = new List <String>()
{
"АГЦЦ", "ЦГГУ", "ГГУАА", "УААЦЦ"
};
List <String> path2 = new List <String>()
{
"АГЦЦ", "ЦГГУ", "УААЦЦ"
};
List <String> path3 = new List <String>()
{
"АГЦЦ", "ГГУАА", "УААЦЦ"
};
Assert.IsTrue(path1.SequenceEqual(paths[0]));
Assert.IsTrue(path2.SequenceEqual(paths[1]));
Assert.IsTrue(path3.SequenceEqual(paths[2]));
}
public void EmptyGraphTest()
{
String molecule = "АГЦЦГГУААЦЦ";
String[] fragmentsArray = { };
DNAGraph graph = new DNAGraph(molecule, fragmentsArray);
var verticles = graph.VerticleList;
Assert.AreEqual(0, verticles.Count);
}
public void FoundPathsCountTest()
{
String molecule = "АГЦЦГГУААЦЦ";
String[] fragmentsArray = { "АГЦЦ", "ЦГГУ", "ГГУАА", "УААЦЦ" };
DNAGraph graph = new DNAGraph(molecule, fragmentsArray);
List <List <String> > paths = graph.GetPaths();
Assert.AreEqual(3, paths.Count);
}
public void InitDNAGraph()
{
if (!((bool)TestDataCheckBox.IsChecked))
{
moleculeName = MoleculeInputTextBox.Text.ToString();
numOfFragments = int.Parse(FragNumTextBox.Text.ToString());
fragments = FragmentsCreator.GetFragments(moleculeName, numOfFragments);
dnaGraph = new DNAGraph(moleculeName, fragments);
}
else
{
moleculeName = testMolecule;
fragments = testFragments;
dnaGraph = new DNAGraph(testMolecule, testFragments);
}
}
public void SameFragmentsTest()
{
String molecule = "АГЦЦАГЦЦАГЦЦ";
String[] fragmentsArray = { "АГЦЦ", "АГЦЦ", "АГЦЦ" };
DNAGraph graph = new DNAGraph(molecule, fragmentsArray);
var verticles = graph.VerticleList;
List <String> neighbours = new List <string>()
{
"АГЦЦ"
};
Assert.AreEqual(verticles[0].GetNeighbours(), neighbours);
Assert.AreEqual(verticles[1].GetNeighbours(), neighbours);
Assert.AreEqual(verticles[2].GetNeighbours(), new List <String>());
}
