private void moveMoleculeCalculationMethod(ModelProperties modelProperties, CompoundProperties compoundProperties, string category)
{
var cm = modelProperties.CalculationMethodFor(category);
if (cm == null)
{
return;
}
modelProperties.RemoveCalculationMethod(cm);
compoundProperties.AddCalculationMethod(cm);
}
public CompoundProperties MapFrom(Compound compound)
{
var compoundProperties = new CompoundProperties {
Compound = compound
};
foreach (var category in _categoryRepository.All())
{
var compoundCalculationMethod = compound.CalculationMethodFor(category) ?? category.DefaultItem;
compoundProperties.AddCalculationMethod(compoundCalculationMethod);
}
//update default mapping for alternatives in compound
foreach (var alternativeGroup in compound.AllParameterAlternativeGroups())
{
var compoundGroupSelection = new CompoundGroupSelection {
AlternativeName = alternativeGroup.DefaultAlternative.Name, GroupName = alternativeGroup.Name
};
compoundProperties.AddCompoundGroupSelection(compoundGroupSelection);
}
return(compoundProperties);
}
protected override void Context()
{
base.Context();
_allCoreCalculationMethods = new List <ICoreCalculationMethod>();
_simulation = new IndividualSimulation {
Properties = new SimulationProperties()
};
var compound1 = new Compound().WithName("C1");
var compound2 = new Compound().WithName("C2");
_simulation.AddUsedBuildingBlock(new UsedBuildingBlock("C1", PKSimBuildingBlockType.Compound)
{
BuildingBlock = compound1
});
_simulation.AddUsedBuildingBlock(new UsedBuildingBlock("C2", PKSimBuildingBlockType.Compound)
{
BuildingBlock = compound2
});
var cm1 = new CalculationMethod {
Category = "MOLECULE"
}.WithName("CM1");
var cm2 = new CalculationMethod {
Category = "MOLECULE"
}.WithName("CM2");
var cm3 = new CalculationMethod {
Category = "MOLECULE"
}.WithName("CM3");
var cm5 = new CalculationMethod {
Category = "NOT MOLECULE"
}.WithName("CM5");
A.CallTo(() => _calculationMethodCategoryRepository.FindBy("MOLECULE")).Returns(new CalculationMethodCategory {
CategoryType = CategoryType.Molecule
});
A.CallTo(() => _calculationMethodCategoryRepository.FindBy("NOT MOLECULE")).Returns(new CalculationMethodCategory {
CategoryType = CategoryType.Individual
});
var cp1 = new CompoundProperties {
Compound = compound1
};
var cp2 = new CompoundProperties {
Compound = compound2
};
_simulation.Properties.AddCompoundProperties(cp1);
_simulation.Properties.AddCompoundProperties(cp2);
cp1.AddCalculationMethod(cm1);
cp1.AddCalculationMethod(cm2);
cp2.AddCalculationMethod(cm2);
cp2.AddCalculationMethod(cm3);
cp2.AddCalculationMethod(cm5);
_coreCM1 = new CoreCalculationMethod {
Name = cm1.Name
};
_coreCM2 = new CoreCalculationMethod {
Name = cm2.Name
};
_coreCM3 = new CoreCalculationMethod {
Name = cm3.Name
};
_coreCM4 = new CoreCalculationMethod {
Name = "TOTO"
};
_coreCM5 = new CoreCalculationMethod {
Name = cm5.Name
};
_allCoreCalculationMethods.Add(_coreCM1);
_allCoreCalculationMethods.Add(_coreCM2);
_allCoreCalculationMethods.Add(_coreCM3);
_allCoreCalculationMethods.Add(_coreCM4);
_allCoreCalculationMethods.Add(_coreCM5);
A.CallTo(() => _coreCalculationMethodRepository.All()).Returns(_allCoreCalculationMethods);
}