public virtual IList <IList <Mention> > ExtractGoldMentions(CoNLL2011DocumentReader.Document conllDoc)
{
IList <ICoreMap> sentences = conllDoc.GetAnnotation().Get(typeof(CoreAnnotations.SentencesAnnotation));
IList <IList <Mention> > allGoldMentions = new List <IList <Mention> >();
CollectionValuedMap <string, ICoreMap> corefChainMap = conllDoc.GetCorefChainMap();
for (int i = 0; i < sentences.Count; i++)
{
allGoldMentions.Add(new List <Mention>());
}
int maxCorefClusterId = -1;
foreach (string corefIdStr in corefChainMap.Keys)
{
int id = System.Convert.ToInt32(corefIdStr);
if (id > maxCorefClusterId)
{
maxCorefClusterId = id;
}
}
int newMentionID = maxCorefClusterId + 1;
foreach (KeyValuePair <string, ICollection <ICoreMap> > idChainEntry in corefChainMap)
{
int id = System.Convert.ToInt32(idChainEntry.Key);
int clusterMentionCnt = 0;
foreach (ICoreMap m in idChainEntry.Value)
{
clusterMentionCnt++;
Mention mention = new Mention();
mention.goldCorefClusterID = id;
if (clusterMentionCnt == 1)
{
// First mention in cluster
mention.mentionID = id;
mention.originalRef = -1;
}
else
{
mention.mentionID = newMentionID;
mention.originalRef = id;
newMentionID++;
}
if (maxID < mention.mentionID)
{
maxID = mention.mentionID;
}
int sentIndex = m.Get(typeof(CoreAnnotations.SentenceIndexAnnotation));
ICoreMap sent = sentences[sentIndex];
mention.startIndex = m.Get(typeof(CoreAnnotations.TokenBeginAnnotation)) - sent.Get(typeof(CoreAnnotations.TokenBeginAnnotation));
mention.endIndex = m.Get(typeof(CoreAnnotations.TokenEndAnnotation)) - sent.Get(typeof(CoreAnnotations.TokenBeginAnnotation));
// will be set by arrange
mention.originalSpan = m.Get(typeof(CoreAnnotations.TokensAnnotation));
// Mention dependency graph is the enhanced dependency graph of the sentence
mention.dependency = sentences[sentIndex].Get(typeof(SemanticGraphCoreAnnotations.EnhancedDependenciesAnnotation));
allGoldMentions[sentIndex].Add(mention);
}
}
return(allGoldMentions);
}
/// <exception cref="System.Exception"/>
public override Document NextDoc()
{
IList <IList <CoreLabel> > allWords = new List <IList <CoreLabel> >();
IList <Tree> allTrees = new List <Tree>();
CoNLL2011DocumentReader.Document conllDoc = reader.GetNextDocument();
if (conllDoc == null)
{
return(null);
}
Annotation anno = conllDoc.GetAnnotation();
IList <ICoreMap> sentences = anno.Get(typeof(CoreAnnotations.SentencesAnnotation));
foreach (ICoreMap sentence in sentences)
{
if (!Constants.UseGoldParses && !replicateCoNLL)
{
// Remove tree from annotation and replace with parse using stanford parser
sentence.Remove(typeof(TreeCoreAnnotations.TreeAnnotation));
}
else
{
Tree tree = sentence.Get(typeof(TreeCoreAnnotations.TreeAnnotation));
treeLemmatizer.TransformTree(tree);
// generate the dependency graph
try
{
SemanticGraph deps = SemanticGraphFactory.MakeFromTree(tree, SemanticGraphFactory.Mode.Enhanced, GrammaticalStructure.Extras.None);
SemanticGraph basicDeps = SemanticGraphFactory.MakeFromTree(tree, SemanticGraphFactory.Mode.Basic, GrammaticalStructure.Extras.None);
sentence.Set(typeof(SemanticGraphCoreAnnotations.BasicDependenciesAnnotation), basicDeps);
sentence.Set(typeof(SemanticGraphCoreAnnotations.EnhancedDependenciesAnnotation), deps);
}
catch (Exception e)
{
logger.Log(Level.Warning, "Exception caught during extraction of Stanford dependencies. Will ignore and continue...", e);
}
}
}
string preSpeaker = null;
int utterance = -1;
foreach (CoreLabel token in anno.Get(typeof(CoreAnnotations.TokensAnnotation)))
{
if (!token.ContainsKey(typeof(CoreAnnotations.SpeakerAnnotation)))
{
token.Set(typeof(CoreAnnotations.SpeakerAnnotation), string.Empty);
}
string curSpeaker = token.Get(typeof(CoreAnnotations.SpeakerAnnotation));
if (!curSpeaker.Equals(preSpeaker))
{
utterance++;
preSpeaker = curSpeaker;
}
token.Set(typeof(CoreAnnotations.UtteranceAnnotation), utterance);
}
// Run pipeline
stanfordProcessor.Annotate(anno);
foreach (ICoreMap sentence_1 in anno.Get(typeof(CoreAnnotations.SentencesAnnotation)))
{
allWords.Add(sentence_1.Get(typeof(CoreAnnotations.TokensAnnotation)));
allTrees.Add(sentence_1.Get(typeof(TreeCoreAnnotations.TreeAnnotation)));
}
// Initialize gold mentions
IList <IList <Mention> > allGoldMentions = ExtractGoldMentions(conllDoc);
IList <IList <Mention> > allPredictedMentions;
//allPredictedMentions = allGoldMentions;
// Make copy of gold mentions since mentions may be later merged, mentionID's changed and stuff
allPredictedMentions = mentionFinder.ExtractPredictedMentions(anno, maxID, dictionaries);
try
{
RecallErrors(allGoldMentions, allPredictedMentions, anno);
}
catch (IOException e)
{
throw new Exception(e);
}
Document doc = Arrange(anno, allWords, allTrees, allPredictedMentions, allGoldMentions, true);
doc.conllDoc = conllDoc;
return(doc);
}
