public void SignificanceTest()
{
using (var reader = new ClinVarVariationReader(FileUtilities.GetReadStream(Resources.VcvXmlFiles("VCV000476472.xml"))))
{
var items = reader.GetItems().ToArray();
Assert.Equal(new [] { "likely benign", "uncertain significance" }, items[0].Significances);
}
}
public void IncludedRecordTest()
{
using (var reader = new ClinVarVariationReader(FileUtilities.GetReadStream(Resources.VcvXmlFiles("VCV000431749.xml"))))
{
var items = reader.GetItems().ToArray();
Assert.Equal(ClinVarCommon.ReviewStatus.no_interpretation_single, items[0].ReviewStatus);
Assert.Equal(new [] { "no interpretation for the single variant" }, items[0].Significances);
}
}
public void InterpretedRecordsTest()
{
using (var reader = new ClinVarVariationReader(FileUtilities.GetReadStream(Resources.VcvXmlFiles("TwoRecords.xml"))))
{
var items = reader.GetItems().ToArray();
Assert.Equal(2, items.Length);
Assert.Equal(79, items[0].VariantId);
Assert.Equal(ClinVarCommon.ReviewStatus.no_criteria, items[0].ReviewStatus);
Assert.Equal(new [] { "pathogenic" }, items[0].Significances);
Assert.Equal(86, items[1].VariantId);
}
}
