internal IBreakEnd[] GetSvBreakEnds(string ensemblName, int start, VariantType svType, int?svEnd, bool isInv3, bool isInv5)
{
if (svEnd == null)
{
return(null);
}
var end = svEnd.Value;
var breakEnds = new IBreakEnd[2];
var chromosome = ReferenceNameUtilities.GetChromosome(_refNameToChromosome, ensemblName);
// ReSharper disable once SwitchStatementMissingSomeCases
switch (svType)
{
case VariantType.deletion:
breakEnds[0] = new BreakEnd(chromosome, chromosome, start, end + 1, false, true);
breakEnds[1] = new BreakEnd(chromosome, chromosome, end + 1, start, true, false);
break;
case VariantType.tandem_duplication:
case VariantType.duplication:
breakEnds[0] = new BreakEnd(chromosome, chromosome, end, start, false, true);
breakEnds[1] = new BreakEnd(chromosome, chromosome, start, end, true, false);
break;
case VariantType.inversion:
if (isInv3)
{
breakEnds[0] = new BreakEnd(chromosome, chromosome, start, end, false, false);
breakEnds[1] = new BreakEnd(chromosome, chromosome, end, start, false, false);
break;
}
if (isInv5)
{
breakEnds[0] = new BreakEnd(chromosome, chromosome, start + 1, end + 1, true, true);
breakEnds[1] = new BreakEnd(chromosome, chromosome, end + 1, start + 1, true, true);
break;
}
breakEnds[0] = new BreakEnd(chromosome, chromosome, start, end, false, false);
breakEnds[1] = new BreakEnd(chromosome, chromosome, end + 1, start + 1, true, true);
break;
default:
return(null);
}
return(breakEnds);
}
private void Add()
{
if (Instruction == "Break")
{
if (!CheckValidHuboEntry(HuboStart))
{
return;
}
if (!CheckValidHuboEntry(HuboEnd))
{
return;
}
BreakTable breakAdd = new BreakTable()
{
StartDate = BreakStart.ToString(Resource.DateFormat),
EndDate = BreakEnd.ToString(Resource.DateFormat),
StartLocation = LocationStart,
EndLocation = LocationEnd
};
MessagingCenter.Send(this, "Break_Added", breakAdd);
}
else if (Instruction == "Note")
{
NoteTable note = new NoteTable()
{
Date = NoteTime.ToString(Resource.DateFormat),
Note = NoteDetail
};
MessagingCenter.Send(this, "Note_Added", note);
}
else if (Instruction == "Drive Shift")
{
if (!CheckValidHuboEntry(HuboStart))
{
return;
}
if (!CheckValidHuboEntry(HuboEnd))
{
return;
}
List <VehicleTable> vehicleKey = new List <VehicleTable>();
vehicleKey = GetVehicles();
DriveTable drive = new DriveTable()
{
StartDate = DriveStartTime.ToString(Resource.DateFormat),
EndDate = DriveEndTime.ToString(Resource.DateFormat),
StartHubo = int.Parse(HuboStart),
EndHubo = int.Parse(HuboEnd),
ActiveVehicle = false,
VehicleKey = vehicleKey[SelectedVehicle].Key
};
MessagingCenter.Send(this, "Drive_Added", drive);
}
Navigation.PopModalAsync();
}
