public static void dynamicBoxCarRange()
{
var Parameters = Program.AddParametersFromFile("");
List <double> masses = new List <double> {
375.0, 698.16, 637.49, 666.43, 1237.5
};
Tuple <double, double, double>[] tuples = new Tuple <double, double, double>[]
{ new Tuple <double, double, double>(400.0, 636.5, 236.5), new Tuple <double, double, double>(638.5, 665.4, 26.9),
new Tuple <double, double, double>(667.4, 697.2, 29.8), new Tuple <double, double, double>(699.2, 1200.0, 500.8) };
string dynamicTargets;
string dynamicMaxITs;
var test = BoxCarScan.BuildDynamicBoxString(Parameters, tuples, out dynamicTargets, out dynamicMaxITs);
Assert.AreEqual(test, "[(402.50,634.00),(641.00,662.90),(669.90,694.70),(701.70,1197.50)]");
Assert.That(dynamicTargets == "[125000,125000,125000,125000]");
Assert.That(dynamicMaxITs == "[63,63,63,63]");
var dynamicInclusion = BoxCarScan.BuildDynamicBoxInclusionString(Parameters, masses, out dynamicTargets, out dynamicMaxITs);
Assert.AreEqual(dynamicInclusion, "[(697.660,698.660),(636.990,637.990),(665.930,666.930)]");
Assert.That(dynamicTargets == "[166666,166666,166666]");
Assert.That(dynamicMaxITs == "[84,84,84]");
var dynamicInclusionForMS2 = DataDependentScan.BuildDynamicBoxInclusionString(Parameters, masses, out dynamicTargets, out dynamicMaxITs);
Assert.AreEqual(dynamicInclusionForMS2, "[(374.300,375.700),(697.460,698.860),(636.790,638.190),(665.730,667.130),(1236.800,1238.200)]");
}
public static void BU_dynamicBoxCarRange()
{
string FilepathMZML = Path.Combine(TestContext.CurrentContext.TestDirectory, @"Data/20170802_QEp1_FlMe_SA_BOX0_SILAC_BoxCar_SLICED.mzML");
MsDataFile file = Mzml.LoadAllStaticData(FilepathMZML, null);
var scans = file.GetAllScansList();
var spectrum = new MzSpectrumXY(scans.First().MassSpectrum.XArray, scans.First().MassSpectrum.YArray, true);
Parameters parameters = Program.AddParametersFromFile("");
var isos = IsoDecon.MsDeconv_Deconvolute(spectrum, spectrum.Range, parameters.DeconvolutionParameter);
List <List <Tuple <double, double, double> > > Boxes = new List <List <Tuple <double, double, double> > >();
BoxCarScan.GenerateDynamicBoxes_BU(isos, parameters, Boxes);
Assert.That(Boxes.Count == 2);
}
public static void test_StaticBoxCar()
{
Parameters parameters = new Parameters();
parameters.BoxCarScanSetting = new BoxCarScanSetting()
{
NumberOfBoxCarScans = 2,
NumberOfBoxCarBoxes = 12,
BoxCarMzRangeLowBound = 400.0,
BoxCarMzRangeHighBound = 1600,
BoxCarOverlap = 2
};
var gammaSep = BoxCarScan.GammaDistributionSeparation(parameters);
var staticBoxCars = BoxCarScan.GenerateStaticBoxes(gammaSep, parameters.BoxCarScanSetting.NumberOfBoxCarScans);
BoxCarScan.BuildStaticBoxString(parameters);
var test = BoxCarScan.StaticBoxCarScanRanges;
Assert.AreEqual(test[1], "[(434.64,473.20),(502.56,539.25),(567.67,604.10),(632.80,669.97),(699.83,738.60),(770.48,811.73),(846.62,891.47),(930.65,980.65),(1026.06,1083.64),(1138.43,1207.86),(1278.01,1368.09),(1467.44,1600.00)]");
}
