public void BiasingParametersLoadParametersFromNull() { // ReSharper disable UnusedVariable var parameters = BiasingParameters.LoadParametersFromJson(null); // ReSharper restore UnusedVariable Assert.Fail("LoadParametersFromJson(null) should throw an ArgumentNullException."); }
public void BiasingParametersJsonFileBinCountNotCutoffSize() { const string inputFile = "resources\\biasing_sample_BIN_COUNT_not_CUTOFF_array_size.json"; // ReSharper disable UnusedVariable var parameters = BiasingParameters.LoadParametersFromJson(inputFile); // ReSharper restore UnusedVariable Assert.Fail("BiasingParametersJsonFileBinCountNotCutoffSize() should throw a System.ArgumentException."); }
public void BiasingParametersJsonFileIreCountNotRareEventInfoSize() { const string inputFile = "resources\\biasing_sample_IRE_COUNT_not_RARE_EVENT_INFO_array_size.json"; // ReSharper disable UnusedVariable var parameters = BiasingParameters.LoadParametersFromJson(inputFile); // ReSharper restore UnusedVariable Assert.Fail("BiasingParametersJsonFileIreCountNotRareEventInfoSize() should throw a System.ArgumentException."); }
public void BiasingParametersJsonFileReactionCountLessThanReactionArraySize() { const string inputFile = "resources\\biasing_sample_REACTION_COUNT_less_than_REACTION_array_size.json"; // ReSharper disable UnusedVariable var parameters = BiasingParameters.LoadParametersFromJson(inputFile); // ReSharper restore UnusedVariable Assert.Fail("BiasingParametersJsonFileReactionCountLessThanReactionArraySize() should throw a System.ArgumentException."); }
public void BiasingParametersJsonFileMissingIreCountParameter() { const string inputFile = "resources\\biasing_sample_IRE_COUNT_missing.json"; // ReSharper disable UnusedVariable var parameters = BiasingParameters.LoadParametersFromJson(inputFile); // ReSharper restore UnusedVariable Assert.Fail("BiasingParametersJsonFileMissingIreCountParameter() should throw a System.ArgumentException."); }
public void BiasingParametersLoadParametersFromInvalidJson() { const string jsonFilename = "resources\\invalid.json"; // ReSharper disable UnusedVariable var parameters = BiasingParameters.LoadParametersFromJson(jsonFilename); // ReSharper restore UnusedVariable Assert.Fail("LoadParametersFromInvalidJson({0}) should throw an ArgumentException.", jsonFilename); }
public void BiasingParametersLoadParametersFromMissingFile() { string tempFileName = Path.GetTempFileName(); File.Delete(tempFileName); // ReSharper disable UnusedVariable var parameters = BiasingParameters.LoadParametersFromJson(tempFileName); // ReSharper restore UnusedVariable Assert.Fail("LoadParametersFromMissingFile(tempFileName) should throw an IO.FileNotFoundException."); }
public void BiasingParametersLoadParametersFromJson() { const string filename = "resources\\biasing_sample.json"; var parameters = BiasingParameters.LoadParametersFromJson(filename); // Verify rare event spec Assert.AreEqual("site_1", parameters.RareEvent.ExpressionLocale); Assert.AreEqual("reExpression", parameters.RareEvent.ExpressionName); Assert.AreEqual(2, parameters.RareEvent.IntermediateRareEventCount); Assert.AreEqual(24, parameters.RareEvent.Thresholds[0]); Assert.AreEqual(32, parameters.RareEvent.Thresholds[1]); // Verify locale[s] Assert.AreEqual(1, parameters.Locales.Count); var localeInfo = parameters.Locales[0]; Assert.AreEqual("site_1", localeInfo.Name); Assert.AreEqual(8, localeInfo.ReactionCount); Assert.AreEqual(8, localeInfo.Reactions.Count); // Verify first reaction var reactionInfo = localeInfo.Reactions[0]; Assert.AreEqual("R1", reactionInfo.Name); Assert.AreEqual(2, reactionInfo.RareEvents.Count); var rareEventInfo = reactionInfo.RareEvents[0]; Assert.AreEqual(2, rareEventInfo.BinCount); Assert.AreEqual(2, rareEventInfo.Gammas.Length); Assert.AreEqual(1, rareEventInfo.Thresholds.Length); Assert.AreEqual(1.06863, rareEventInfo.Gammas[0]); Assert.AreEqual(1.56882, rareEventInfo.Gammas[1]); Assert.AreEqual(0.00031386, rareEventInfo.Thresholds[0]); // Verify last reaction reactionInfo = localeInfo.Reactions[localeInfo.ReactionCount - 1]; Assert.AreEqual("R8", reactionInfo.Name); Assert.AreEqual(2, reactionInfo.RareEvents.Count); rareEventInfo = reactionInfo.RareEvents[1]; Assert.AreEqual(7, rareEventInfo.BinCount); Assert.AreEqual(7, rareEventInfo.Gammas.Length); Assert.AreEqual(6, rareEventInfo.Thresholds.Length); Assert.AreEqual(2.37130, rareEventInfo.Gammas[0]); Assert.AreEqual(2.191004, rareEventInfo.Gammas[6]); Assert.AreEqual(0.3935499, rareEventInfo.Thresholds[5]); }
public void BiasingParametersWriteParametersToJson() { const string inputFile = "resources\\biasing_sample.json"; var parameters = BiasingParameters.LoadParametersFromJson(inputFile); string outputFile = Path.GetTempFileName(); bool areSame = false; try { Console.WriteLine("Writing biasing parameters to '{0}'...", outputFile); parameters.WriteParametersToJsonFile(outputFile); FileAssert.AreEqual(inputFile, outputFile); areSame = true; } finally { if (areSame) { File.Delete(outputFile); } } }