public void BiasingParametersLocaleInfoConstructor()
{
var localeInfo = new BiasingParameters.LocaleInfo();
Assert.AreEqual(string.Empty, localeInfo.Name);
Assert.AreEqual(0, localeInfo.ReactionCount);
Assert.IsEmpty(localeInfo.Reactions);
}
public void BiasingParametersLocaleInfoName()
{
const string name = "test";
var localeInfo = new BiasingParameters.LocaleInfo {
Name = name
};
Assert.AreEqual(name, localeInfo.Name);
}
public void Initialize()
{
CheckParameters();
_rareEventValue = model.Parameters.First(p => p.Name == _reValName).Value;
_rareEventTest = new EqualTo(_reExpression, new ConstantValue(_rareEventValue));
SetRareEventType();
if (_biasingParametersFlag)
{
for (int i = 0; i < _reactions.NumReactions; i++)
{
_gamma.Add(new double[_gammaSize]);
_propensityCutoff.Add(new double[_gammaSize - 1]);
}
_biasingParameters.RareEvent.ExpressionLocale = "global";
_biasingParameters.RareEvent.ExpressionName = _reExpressionName;
foreach (var locale in modelInfo.Locales)
{
var newLocaleInfo = new BiasingParameters.LocaleInfo {
Name = locale.Name
};
var newReactionInfo = newLocaleInfo.Reactions;
LocaleInfo testLocale = locale;
var reactions = modelInfo.Reactions.Where(r => r.Locale == testLocale);
newReactionInfo.AddRange(reactions.Select(reaction => new BiasingParameters.ReactionInfo {
Name = reaction.Name
}));
_biasingParameters.Locales.Add(newLocaleInfo);
}
}
else
{
for (int i = 0; i < _reactions.NumReactions; i++)
{
var localeIndex = LocaleIndex(_reactions.Reactions[i]);
var reactionIndex = ReactionIndex(_reactions.Reactions[i], localeIndex);
var tempRareEvent = _biasingParameters.Locales[localeIndex].Reactions[reactionIndex].RareEvents[_biasingParameters.RareEvent.IntermediateRareEventCount - 1];
_gamma.Add(tempRareEvent.Gammas);
_propensityCutoff.Add(tempRareEvent.Thresholds);
}
}
}
public void BiasingParametersLocaleInfoReactions()
{
var localeInfo = new BiasingParameters.LocaleInfo {
Name = "bar"
};
var rareEventInfo = new BiasingParameters.RareEventInfo {
BinCount = 42
};
rareEventInfo.Gammas[0] = Math.E;
rareEventInfo.Thresholds[1] = Math.PI;
var reactionInfo = new BiasingParameters.ReactionInfo {
Name = "foo"
};
reactionInfo.RareEvents.Add(rareEventInfo);
localeInfo.Reactions.Add(reactionInfo);
Assert.AreEqual(1, localeInfo.ReactionCount);
Assert.IsNotEmpty(localeInfo.Reactions);
Assert.AreEqual(reactionInfo, localeInfo.Reactions[0]);
}
