//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//ORIGINAL LINE: public void start(final BCF2Encoder encoder, final org.broadinstitute.variant.variantcontext.VariantContext vc) throws java.io.IOException
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
public override void start(BCF2Encoder encoder, VariantContext vc)
{
// TODO
// TODO this piece of code consumes like 10% of the runtime alone because fo the vc.getGenotypes() iteration
// TODO
encodingType = BCF2Type.INT8;
foreach (Genotype g in vc.Genotypes)
{
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final int[] pls = ige.getValues(g);
int[] pls = ige.getValues(g);
//JAVA TO C# CONVERTER WARNING: The original Java variable was marked 'final':
//ORIGINAL LINE: final org.broadinstitute.variant.bcf2.BCF2Type plsType = getFieldEncoder().getType(pls);
BCF2Type plsType = FieldEncoder.getType(pls);
encodingType = BCF2Utils.maxIntegerType(encodingType, plsType);
if (encodingType == BCF2Type.INT32)
{
break; // stop early
}
}
base.start(encoder, vc);
}
