private void AssertDataCorrect(SummaryGraphPane pane, int statsIndex, bool record = true)
{
AreaCVGraphData data = null;
WaitForConditionUI(() => (data = GetCurrentData(pane)) != null && data.IsValid);
WaitForGraphs();
RunUI(() =>
{
var testSupport = pane as IAreaCVHistogramInfo;
int items = testSupport != null ? testSupport.Items : 0;
var graphDataStatistics = new AreaCVGraphDataStatistics(data, items);
if (!RecordData)
{
Assert.AreEqual(STATS[statsIndex], graphDataStatistics);
}
else if (record)
{
Console.WriteLine(graphDataStatistics.ToCode());
}
});
}
private void AssertDataCorrect(SummaryGraphPane pane, int statsIndex)
{
AreaCVGraphData data = null;
WaitForConditionUI(() => (data = GetCurrentData(pane)) != null);
WaitForGraphs();
RunUI(() =>
{
var info = pane as IAreaCVHistogramInfo;
int items = info != null ? info.Items : 0;
var graphDataStatistics = new AreaCVGraphDataStatistics(data, items);
if (!RecordData)
{
Assert.AreEqual(STATS[statsIndex], new AreaCVGraphDataStatistics(data, items));
}
else
{
Console.WriteLine(graphDataStatistics.ToCode());
}
});
}
private void TestHistogramQValues <T>(Action showHistogram, int statsStartIndex) where T : SummaryGraphPane
{
RunUI(() =>
{
showHistogram();
SkylineWindow.SetAreaCVPointsType(PointsTypePeakArea.targets);
SkylineWindow.SetNormalizationMethod(NormalizationMethod.NONE);
});
WaitForGraphs();
var graph = SkylineWindow.GraphPeakArea;
var toolbar = graph.Toolbar as AreaCVToolbar;
Assert.IsNotNull(toolbar);
RunUI(() => toolbar.SetMinimumDetections(2));
OpenAndChangeAreaCVProperties(graph, p => p.QValueCutoff = 0.01);
// Test if the toolbar is there and if the displayed data is correct
T pane;
Assert.IsTrue(graph.TryGetGraphPane(out pane));
Assert.IsTrue(pane.HasToolbar);
AssertDataCorrect(pane, statsStartIndex++);
RunUI(() =>
{
SkylineWindow.SetAreaCVPointsType(PointsTypePeakArea.decoys);
});
WaitForGraphs();
AssertDataCorrect(pane, statsStartIndex); // No ++ here on purpose
// Make sure the data is not affected by the qvalue cutoff if the points type is decoys
OpenAndChangeAreaCVProperties(graph, p => p.QValueCutoff = 0.02);
AssertDataCorrect(pane, statsStartIndex++, false);
// Make sure that the data is correct after changing the qvalue cutoff, this time with points type targets
RunUI(() =>
{
SkylineWindow.SetAreaCVPointsType(PointsTypePeakArea.targets);
});
WaitForGraphs();
AssertDataCorrect(pane, statsStartIndex++);
RunUI(() => toolbar.SetMinimumDetections(3));
UpdateGraphAndWait(graph);
AssertDataCorrect(pane, statsStartIndex++);
// Verify that a qvalue cutoff of 1.0 has the same effect as no qvalue cutoff
OpenAndChangeAreaCVProperties(graph, p => p.QValueCutoff = 1.0);
AreaCVGraphData qvalue1Data = null;
WaitForConditionUI(() => (qvalue1Data = GetCurrentData(pane)) != null);
AreaCVGraphDataStatistics qvalue1Statistics = null;
RunUI(() => qvalue1Statistics = new AreaCVGraphDataStatistics(qvalue1Data, pane.GetTotalBars()));
OpenAndChangeAreaCVProperties(graph, p => p.QValueCutoff = double.NaN);
AreaCVGraphData qvalueNaNData = null;
WaitForConditionUI(() => (qvalueNaNData = GetCurrentData(pane)) != null);
AreaCVGraphDataStatistics qvalueNaNStatistics = null;
RunUI(() => qvalueNaNStatistics = new AreaCVGraphDataStatistics(qvalueNaNData, pane.GetTotalBars()));
Assert.AreEqual(qvalue1Statistics, qvalueNaNStatistics);
}
