public void Annotate_mito_GRCh37()
{
var position = new Mock <IPosition>();
position.SetupGet(x => x.Variants).Returns(GetVariants);
position.SetupGet(x => x.Chromosome).Returns(ChromosomeUtilities.ChrM);
var csProvider = new Mock <IAnnotationProvider>();
csProvider.SetupGet(x => x.Assembly).Returns(GenomeAssembly.GRCh37);
csProvider.Setup(x => x.Annotate(It.IsAny <IAnnotatedPosition>())).
Callback((IAnnotatedPosition x) => { x.CytogeneticBand = "testCytoBand"; });
var taProvider = new Mock <IAnnotationProvider>();
taProvider.SetupGet(x => x.Assembly).Returns(GenomeAssembly.GRCh37);
taProvider.Setup(x => x.Annotate(It.IsAny <IAnnotatedPosition>())).Callback((IAnnotatedPosition x) => { });//do nothing
var annotator = new Annotator(taProvider.Object, null, null, csProvider.Object, null, null);
annotator.EnableMitochondrialAnnotation();
var annotatedPosition = annotator.Annotate(position.Object);
Assert.NotNull(annotatedPosition.CytogeneticBand);
}
public void Annotate_null_position()
{
var annotator = new Annotator(null, null, null, null, null, null);
var annotatedPosition = annotator.Annotate(null);
Assert.Null(annotatedPosition);
}
public void ManualAnnotation()
{
// [You can set these globally in the config file too]
// Enable Annotated Execution.
Manager.Settings.AnnotateExecution = true;
// Slow down test execution so we can visually track the actions on the page.
Manager.Settings.ExecutionDelay = 1000; // half a second wait between actions.
// Launch an instance of the browser
Manager.LaunchNewBrowser();
// Navigate to the test page
ActiveBrowser.NavigateTo(Path.Combine(TestContext.TestDeploymentDir, TESTPAGE));
Annotator myAnnotator = new Annotator(ActiveBrowser);
myAnnotator.Annotate("This annotation message appears at the top of the browser document window");
myAnnotator.Annotate("This annotation message appears at the top left corner of the browser document window",
350, OffsetReference.TopLeftCorner);
myAnnotator.Annotate(new Point(100, 300), "This annotation message appears under the point at 100,300 in the browser document window");
myAnnotator.Annotate(Find.ById("btn1").GetRectangle(), "This annotation highlights the Color On button");
}
// Update is called once per frame
void Update()
{
count++;
if (count % 10 == 0)
{
this.placements.MakePlaceRandomly(this.komaList);
var nowDatetime = DateTime.Now.ToString("yyyyMMddHHmmssfff");
var annotationFileName = "C:\\Users\\rei\\Desktop\\TrueTrainingData\\annotations\\" + nowDatetime + ".xml";
var imageFileName = "C:\\Users\\rei\\Desktop\\TrueTrainingData\\images\\" + nowDatetime + ".png";
Annotator.Annotate(this.komaList, annotationFileName);
ScreenCapture.CaptureScreenshot(imageFileName);
this.placements.Reset();
this.lightManager.SetLightRandomly();
}
}
public void PlayWithAnnotator()
{
manager.ActiveBrowser.NavigateTo(
"http://automatetheplanet.com/healthy-diet-menu-generator/");
HtmlImage healthyBurgerImage = manager.ActiveBrowser.Find.ByXPath <HtmlImage>(
"/html/body/div[1]/div[3]/section/article/div/div[2]/a/img");
HtmlInputCheckBox additionalSugarCheckbox =
manager.ActiveBrowser.Find.ById <HtmlInputCheckBox>("ninja_forms_field_18");
additionalSugarCheckbox.Check(
isChecked: true,
invokeOnChange: true,
invokeOnClickChanged: true);
// Add rectangle around element + custom message
Annotator annotator = new Annotator(manager.ActiveBrowser);
annotator.Annotate(
healthyBurgerImage.GetRectangle(),
"This is the most healthy meal EVER! Honestly!");
}
public void Annotate_conservation_annotation()
{
var position = new Mock <IPosition>();
position.SetupGet(x => x.Variants).Returns(GetMitoVariants);
position.SetupGet(x => x.Chromosome).Returns(new Chromosome("chr1", "1", 0));
var csProvider = new Mock <IAnnotationProvider>();
csProvider.SetupGet(x => x.Assembly).Returns(GenomeAssembly.GRCh37);
csProvider.Setup(x => x.Annotate(It.IsAny <IAnnotatedPosition>())).
Callback((IAnnotatedPosition x) => { x.CytogeneticBand = "testCytoBand"; });
var taProvider = new Mock <IAnnotationProvider>();
taProvider.SetupGet(x => x.Assembly).Returns(GenomeAssembly.GRCh37);
taProvider.Setup(x => x.Annotate(It.IsAny <IAnnotatedPosition>())).Callback((IAnnotatedPosition x) => { });//do nothing
var annotator = new Annotator(taProvider.Object, null, null, csProvider.Object, null);
var annotatedPosition = annotator.Annotate(position.Object);
Assert.Equal("testCytoBand", annotatedPosition.CytogeneticBand);
}