public void GetJsonStrings_NullJsonStrings()
{
var dataSource = new SaDataSource("bob", "bobVcf", "A", false, false, null, null);
var annotatedSaDataSource = new AnnotatedSaDataSource(dataSource, "A");
var jsonStrings = annotatedSaDataSource.GetJsonStrings();
Assert.Null(jsonStrings);
}
private static void AddSupplementaryAnnotation(IAnnotatedVariant annotatedVariant)
{
var dataSource = new SaDataSource("clinVar", "clinVar", "C", true, false, null,
new[] { "\"good\":\"result\"" });
var annotatedSaDataSource = new AnnotatedSaDataSource(dataSource, "C");
var dataSource2 = new SaDataSource("exac", "exac", "G", true, true, null,
new[] { "\"bad\":\"temper\"", "\"brutal\":\"kangaroo\"" });
var annotatedSaDataSource2 = new AnnotatedSaDataSource(dataSource2, "G");
annotatedVariant.SupplementaryAnnotations.Add(annotatedSaDataSource);
annotatedVariant.SupplementaryAnnotations.Add(annotatedSaDataSource2);
}
public void GetJsonStrings_Positional_AlleleSpecific()
{
string[] expectedJsonStrings = { "test1", "test2" };
var dataSource = new SaDataSource("bob", "bobVcf", "A", false, false, null, expectedJsonStrings);
var annotatedSaDataSource = new AnnotatedSaDataSource(dataSource, "A");
var jsonStrings = annotatedSaDataSource.GetJsonStrings();
Assert.NotNull(jsonStrings);
Assert.Equal(2, jsonStrings.Count);
Assert.Contains(expectedJsonStrings[0], jsonStrings[0]);
Assert.Contains(expectedJsonStrings[1], jsonStrings[1]);
}