public async Task RecognizeHealthcareEntitiesBatchWithStatisticsTest()
{
TextAnalyticsClient client = GetClient();
AnalyzeHealthcareEntitiesOptions options = new AnalyzeHealthcareEntitiesOptions()
{
IncludeStatistics = true
};
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(s_batchDocuments, options);
await operation.WaitForCompletionAsync();
ValidateOperationProperties(operation);
//Take the first page
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value.ToEnumerableAsync().Result.FirstOrDefault();
var expectedOutput = new Dictionary <string, List <string> >()
{
{ "1", s_document1ExpectedEntitiesOutput },
{ "2", s_document2ExpectedEntitiesOutput },
};
ValidateBatchDocumentsResult(resultCollection, expectedOutput, true);
}
public async Task HealthcareAsync_ManualPolling()
{
string endpoint = TestEnvironment.Endpoint;
string apiKey = TestEnvironment.ApiKey;
var client = new TextAnalyticsClient(new Uri(endpoint), new AzureKeyCredential(apiKey));
#region Snippet:RecognizeHealthcareEntitiesAsyncManualPolling
string document = @"RECORD #333582770390100 | MH | 85986313 | | 054351 | 2/14/2001 12:00:00 AM | CORONARY ARTERY DISEASE | Signed | DIS | \
Admission Date: 5/22/2001 Report Status: Signed Discharge Date: 4/24/2001 ADMISSION DIAGNOSIS: CORONARY ARTERY DISEASE. \
HISTORY OF PRESENT ILLNESS: The patient is a 54-year-old gentleman with a history of progressive angina over the past several months. \
The patient had a cardiac catheterization in July of this year revealing total occlusion of the RCA and 50% left main disease ,\
with a strong family history of coronary artery disease with a brother dying at the age of 52 from a myocardial infarction and \
another brother who is status post coronary artery bypass grafting. The patient had a stress echocardiogram done on July , 2001 , \
which showed no wall motion abnormalities , but this was a difficult study due to body habitus. The patient went for six minutes with \
minimal ST depressions in the anterior lateral leads , thought due to fatigue and wrist pain , his anginal equivalent. Due to the patient's \
increased symptoms and family history and history left main disease with total occasional of his RCA was referred for revascularization with open heart surgery.";
AnalyzeHealthcareEntitiesOperation healthOperation = await client.StartAnalyzeHealthcareEntitiesAsync(new List <string>() { document });
TimeSpan pollingInterval = new TimeSpan(1000);
while (true)
{
await healthOperation.UpdateStatusAsync();
if (healthOperation.HasCompleted)
{
break;
}
await Task.Delay(pollingInterval);
}
AnalyzeHealthcareEntitiesResultCollection results = healthOperation.Value;
Console.WriteLine($"Results of Azure Text Analytics \"Healthcare Async\" Model, version: \"{results.ModelVersion}\"");
Console.WriteLine("");
foreach (AnalyzeHealthcareEntitiesResult result in results)
{
Console.WriteLine($" Recognized the following {result.Entities.Count} healthcare entities:");
foreach (HealthcareEntity entity in result.Entities)
{
Console.WriteLine($" Entity: {entity.Text}");
Console.WriteLine($" Category: {entity.Category}");
Console.WriteLine($" Offset: {entity.Offset}");
Console.WriteLine($" Length: {entity.Length}");
Console.WriteLine($" Links:");
foreach (EntityDataSource entityDataSource in entity.DataSources)
{
Console.WriteLine($" Entity ID in Data Source: {entityDataSource.EntityId}");
Console.WriteLine($" DataSource: {entityDataSource.Name}");
}
}
Console.WriteLine("");
}
}
public async Task RecognizeHealthcareEntitiesBatchWithErrorTest()
{
TextAnalyticsClient client = GetClient();
var documents = new List <string>
{
"Subject is taking 100mg of ibuprofen twice daily",
"Can cause rapid or irregular heartbeat, delirium, panic, psychosis, and heart failure.",
"",
};
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(documents);
await operation.WaitForCompletionAsync();
ValidateOperationProperties(operation);
//Take the first page
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value.ToEnumerableAsync().Result.FirstOrDefault();
Assert.IsNotNull(resultCollection[2].Id);
Assert.IsTrue(!resultCollection[0].HasError);
Assert.IsTrue(!resultCollection[1].HasError);
Assert.IsTrue(resultCollection[2].HasError);
InvalidOperationException ex = Assert.Throws <InvalidOperationException>(() => resultCollection[2].Entities.GetType());
Assert.AreEqual(TextAnalyticsErrorCode.InvalidDocument, resultCollection[2].Error.ErrorCode.ToString());
}
public async Task RecognizeHealthcareEntitiesBatchConvenienceWithStatisticsTest()
{
TextAnalyticsClient client = GetClient();
var documents = batchConvenienceDocuments;
AnalyzeHealthcareEntitiesOptions options = new AnalyzeHealthcareEntitiesOptions()
{
IncludeStatistics = true
};
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(documents, "en", options);
await operation.WaitForCompletionAsync(PollingInterval);
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value;
Assert.AreEqual(documents.Count, resultCollection.Statistics.DocumentCount);
Assert.AreEqual(48, resultCollection[0].Statistics.CharacterCount);
Assert.AreEqual(1, resultCollection[0].Statistics.TransactionCount);
Assert.Greater(resultCollection.Statistics.DocumentCount, 0);
Assert.AreEqual(2, resultCollection.Statistics.DocumentCount);
Assert.AreEqual(2, resultCollection.Statistics.TransactionCount);
Assert.AreEqual(0, resultCollection.Statistics.InvalidDocumentCount);
Assert.AreEqual(2, resultCollection.Statistics.ValidDocumentCount);
}
public async Task RecognizeHealthcareEntitiesTest()
{
TextAnalyticsClient client = GetClient();
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(batchDocuments);
await operation.WaitForCompletionAsync(PollingInterval);
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value;
Assert.AreEqual(2, resultCollection.Count);
AnalyzeHealthcareEntitiesResult result = resultCollection[0];
var entitiesList = new List <string> {
"100mg", "ibuprofen", "twice daily"
};
Assert.AreEqual(3, result.Entities.Count);
Assert.IsNotNull(result.Id);
Assert.AreEqual("1", result.Id);
foreach (HealthcareEntity entity in result.Entities)
{
Assert.IsTrue(entitiesList.Contains(entity.Text));
if (entity.Text == "ibuprofen")
{
var linksList = new List <string> {
"UMLS", "AOD", "ATC", "CCPSS", "CHV", "CSP", "DRUGBANK", "GS", "LCH_NW", "LNC", "MEDCIN", "MMSL", "MSH", "MTHSPL", "NCI", "NCI_CTRP", "NCI_DCP", "NCI_DTP", "NCI_FDA", "NCI_NCI-GLOSS", "NDDF", "PDQ", "RCD", "RXNORM", "SNM", "SNMI", "SNOMEDCT_US", "USP", "USPMG", "VANDF"
};
foreach (EntityDataSource entityDataSource in entity.DataSources)
{
Assert.IsTrue(linksList.Contains(entityDataSource.Name));
}
}
if (entity.Text == "100mg")
{
Assert.IsTrue(entity.RelatedEntities.Count == 1);
var relatedEntity = entity.RelatedEntities.FirstOrDefault().Key;
Assert.AreEqual("ibuprofen", relatedEntity.Text);
Assert.AreEqual("MedicationName", relatedEntity.Category);
Assert.AreEqual(0, relatedEntity.Length);
Assert.AreEqual(27, relatedEntity.Offset);
Assert.AreEqual(1.0, relatedEntity.ConfidenceScore);
// TODO - DosageOfMedication is not in relation types and is returned from the service. Need to add to swagger.
//Assert.AreEqual(HealthcareEntityRelationType.DosageOfMedication, entity.RelatedEntities.ElementAt(0).Value);
}
}
}
public async Task RecognizeHealthcareEntitiesBatchTest()
{
TextAnalyticsClient client = GetClient();
List <TextDocumentInput> documents = batchDocuments;
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(documents);
await operation.WaitForCompletionAsync(PollingInterval);
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value;
Assert.AreEqual(2, resultCollection.Count);
}
public async Task RecognizeHealthcareEntitiesWithLanguageTest()
{
TextAnalyticsClient client = GetClient();
string document = singleEnglish;
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(new List <string>() { document }, "en");
await operation.WaitForCompletionAsync(PollingInterval);
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value;
foreach (AnalyzeHealthcareEntitiesResult result in resultCollection)
{
Assert.AreEqual(3, result.Entities.Count);
Assert.IsNotNull(result.Id);
}
}
private void ValidateBatchDocumentsResult(AnalyzeHealthcareEntitiesResultCollection results, Dictionary <string, List <string> > minimumExpectedOutput, bool includeStatistics = default)
{
Assert.That(results.ModelVersion, Is.Not.Null.And.Not.Empty);
if (includeStatistics)
{
Assert.IsNotNull(results.Statistics);
Assert.Greater(results.Statistics.DocumentCount, 0);
Assert.Greater(results.Statistics.TransactionCount, 0);
Assert.GreaterOrEqual(results.Statistics.InvalidDocumentCount, 0);
Assert.GreaterOrEqual(results.Statistics.ValidDocumentCount, 0);
}
else
{
Assert.IsNull(results.Statistics);
}
foreach (AnalyzeHealthcareEntitiesResult entitiesInDocument in results)
{
Assert.That(entitiesInDocument.Id, Is.Not.Null.And.Not.Empty);
Assert.False(entitiesInDocument.HasError);
//Even though statistics are not asked for, TA 5.0.0 shipped with Statistics default always present.
Assert.IsNotNull(entitiesInDocument.Statistics);
if (includeStatistics)
{
Assert.GreaterOrEqual(entitiesInDocument.Statistics.CharacterCount, 0);
Assert.Greater(entitiesInDocument.Statistics.TransactionCount, 0);
}
else
{
Assert.AreEqual(0, entitiesInDocument.Statistics.CharacterCount);
Assert.AreEqual(0, entitiesInDocument.Statistics.TransactionCount);
}
Assert.IsNotNull(entitiesInDocument.Warnings);
Assert.IsNotNull(entitiesInDocument.EntityRelations);
Assert.IsNotNull(entitiesInDocument.FhirBundle);
ValidateInDocumenResult(entitiesInDocument.Entities, minimumExpectedOutput[entitiesInDocument.Id]);
}
}
public async Task RecognizeHealthcareEntitiesWithLanguageTest()
{
TextAnalyticsClient client = GetClient();
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(s_batchConvenienceDocuments, "en");
await operation.WaitForCompletionAsync();
ValidateOperationProperties(operation);
//Take the first page
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value.ToEnumerableAsync().Result.FirstOrDefault();
var expectedOutput = new Dictionary <string, List <string> >()
{
{ "0", s_document1ExpectedEntitiesOutput },
{ "1", s_document2ExpectedEntitiesOutput },
};
ValidateBatchDocumentsResult(resultCollection, expectedOutput);
}
public async Task RecognizeHealthcareEntitiesBatchWithErrorTest()
{
TextAnalyticsClient client = GetClient();
var documents = new List <string>
{
"Subject is taking 100mg of ibuprofen twice daily",
"Can cause rapid or irregular heartbeat, delirium, panic, psychosis, and heart failure.",
"",
};
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(documents);
await operation.WaitForCompletionAsync(PollingInterval);
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value;
Assert.IsNotNull(resultCollection[2].Id);
Assert.IsTrue(resultCollection[2].HasError);
Assert.AreEqual(TextAnalyticsErrorCode.InvalidDocument, resultCollection[2].Error.ErrorCode.ToString());
}
public async Task RecognizeHealthcareEntitiesWithTopParameter()
{
TextAnalyticsClient client = GetClient();
AnalyzeHealthcareEntitiesOptions options = new AnalyzeHealthcareEntitiesOptions()
{
Top = 1
};
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(batchDocuments, options);
await operation.WaitForCompletionAsync(PollingInterval);
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value;
Assert.AreEqual(1, resultCollection.Count);
Assert.AreEqual(3, resultCollection[0].Entities.Count);
Assert.IsNotNull(resultCollection[0].Id);
Assert.AreEqual("1", resultCollection[0].Id);
Assert.AreEqual("100mg", resultCollection[0].Entities.FirstOrDefault().Text);
Assert.AreEqual("Dosage", resultCollection[0].Entities.FirstOrDefault().Category);
}
public async Task RecognizeHealthcareEntitiesWithSkipParameter()
{
TextAnalyticsClient client = GetClient();
AnalyzeHealthcareEntitiesOptions options = new AnalyzeHealthcareEntitiesOptions()
{
Skip = 1
};
AnalyzeHealthcareEntitiesOperation operation = await client.StartAnalyzeHealthcareEntitiesAsync(batchDocuments, options);
await operation.WaitForCompletionAsync(PollingInterval);
AnalyzeHealthcareEntitiesResultCollection resultCollection = operation.Value;
Assert.IsFalse(resultCollection[0].HasError);
Assert.IsNotNull(resultCollection[0].Warnings);
Assert.AreEqual(1, resultCollection.Count);
Assert.AreEqual(6, resultCollection[0].Entities.Count);
Assert.IsNotNull(resultCollection[0].Id);
Assert.AreEqual("2", resultCollection[0].Id);
Assert.AreEqual("rapid", resultCollection[0].Entities.FirstOrDefault().Text);
Assert.AreEqual("SymptomOrSign", resultCollection[0].Entities.FirstOrDefault().Category);
}
