// Update is called once per frame
void Awake()
{
connectionsHolder = new GameObject("Connections");
connectionsHolder.transform.parent = transform;
amberEnvironment = Instantiate <AmberEnvironment> (GameObject.FindObjectOfType <PrefabManager>().amberEnvironmentPrefab, transform);
connectionPrefab = Instantiate <Connection> (GameObject.FindObjectOfType <PrefabManager>().connectionPrefab, transform);
amberEnvironment.GetEnvironmentFromXML();
bondTypes.GetBondTypesFromXML();
anglesDict = new Dictionary <long, AngleConnection>();
dihedralsDict = new Dictionary <long, DihedralConnection>();
selection = new List <int>();
parameters = Instantiate <Parameters>(GameObject.FindObjectOfType <PrefabManager>().parametersPrefab, transform);
}
