private AlleleCategory CalculateType()
{
if (!String.IsNullOrEmpty(ReferenceAllele) &&
!String.IsNullOrEmpty(AlternateAllele))
{
if (ReferenceAllele.ToLower() == AlternateAllele.ToLower())
{
return(AlleleCategory.Reference);
}
if (AlternateAllele == ".")
{
return(AlleleCategory.Reference);
}
if (ReferenceAllele.Length == AlternateAllele.Length)
{
return(AlternateAllele.Length == 1 ? AlleleCategory.Snv : AlleleCategory.Mnv);
}
else
{
if (ReferenceAllele.Length == 1)
{
return(AlleleCategory.Insertion);
}
else if (AlternateAllele.Length == 1)
{
return(AlleleCategory.Deletion);
}
}
}
return(AlleleCategory.Unsupported);
}
public override int GetHashCode()
{
unchecked
{
var hashCode = RsId.GetHashCode();
hashCode = (hashCode * 397) ^ (ReferenceAllele?.GetHashCode() ?? 0);
hashCode = (hashCode * 397) ^ (AlternateAllele?.GetHashCode() ?? 0);
return(hashCode);
}
}
public override int GetHashCode()
{
unchecked
{
var hashCode = Start.GetHashCode() ^ Chromosome.GetHashCode();
hashCode = (hashCode * 397) ^ (AlternateAllele?.GetHashCode() ?? 0);
return(hashCode);
}
}
public override int GetHashCode()
{
var hashCode = Start.GetHashCode() ^ ReferenceName.GetHashCode();
hashCode = (hashCode * 397) ^ End.GetHashCode();
hashCode = (hashCode * 397) ^ VariantType.GetHashCode();
hashCode = (hashCode * 397) ^ Source.GetHashCode();
hashCode = (hashCode * 397) ^ AlternateAllele.GetHashCode();
return(hashCode);
}
public override int GetHashCode()
{
// ReSharper disable NonReadonlyMemberInGetHashCode
var hashCode = Start.GetHashCode() ^ Chromosome.GetHashCode();
hashCode = (hashCode * 397) ^ (AlternateAllele?.GetHashCode() ?? 0);
hashCode = (hashCode * 397) ^ (AnnotationType?.GetHashCode() ?? 0);
// ReSharper restore NonReadonlyMemberInGetHashCode
return(hashCode);
}
public override bool Equals(object other)
{
if (!(other is GnomadItem otherItem))
{
return(false);
}
// Return true if the fields match:
return(Equals(Chromosome, otherItem.Chromosome) &&
Start == otherItem.Start &&
AlternateAllele.Equals(otherItem.AlternateAllele));
}
public override bool Equals(object obj)
{
if (!(obj is ClinVarItem item))
{
return(false);
}
return(Chromosome == item.Chromosome &&
Start == item.Start &&
Id.Equals(item.Id) &&
ReferenceAllele.Equals(item.ReferenceAllele) &&
AlternateAllele.Equals(item.AlternateAllele));
}
public override bool Equals(object other)
{
if (!(other is CustomItem otherItem))
{
return(false);
}
return(Chromosome.Equals(otherItem.Chromosome) &&
Start.Equals(otherItem.Start) &&
ReferenceAllele.Equals(otherItem.ReferenceAllele) &&
AlternateAllele.Equals(otherItem.AlternateAllele) &&
AnnotationType.Equals(otherItem.AnnotationType));
}
public override int GetHashCode()
{
unchecked
{
var hashCode = Chromosome?.GetHashCode() ?? 0;
hashCode = (hashCode * 397) ^ Start;
hashCode = (hashCode * 397) ^ (Id?.GetHashCode() ?? 0);
hashCode = (hashCode * 397) ^ (ReferenceAllele?.GetHashCode() ?? 0);
hashCode = (hashCode * 397) ^ (AlternateAllele?.GetHashCode() ?? 0);
hashCode = (hashCode * 397) ^ (Gene?.GetHashCode() ?? 0);
return(hashCode);
}
}
public override bool Equals(object other)
{
// If parameter is null return false.
// if other cannot be cast into OneKGenItem, return false
if (!(other is EvsItem otherItem))
{
return(false);
}
// Return true if the fields match:
return(Equals(Chromosome, otherItem.Chromosome) &&
Start == otherItem.Start &&
AlternateAllele.Equals(otherItem.AlternateAllele)
);
}
public override bool Equals(object other)
{
// If parameter is null return false.
if (!(other is DbSnpItem otherItem))
{
return(false);
}
// Return true if the fields match:
return(Equals(Chromosome, otherItem.Chromosome) &&
Start == otherItem.Start &&
RsId == otherItem.RsId &&
string.Equals(ReferenceAllele, otherItem.ReferenceAllele) &&
AlternateAllele.Equals(otherItem.AlternateAllele));
}
public override int GetHashCode()
{
// ReSharper disable NonReadonlyMemberInGetHashCode
var hashCode = Start.GetHashCode();
if (Chromosome != null)
{
hashCode ^= Chromosome.GetHashCode();
}
if (Id != null)
{
hashCode ^= Id.GetHashCode();
}
if (AlternateAllele != null)
{
hashCode ^= AlternateAllele.GetHashCode();
}
if (ReferenceAllele != null)
{
hashCode ^= ReferenceAllele.GetHashCode();
}
// ReSharper restore NonReadonlyMemberInGetHashCode
return(hashCode);
}
