void GetDefaultTerminationSymbol(AlphabetsTypes option)
{
IAlphabet alphabetInstance = null;
byte outputDefaultTerminationSymbol = 0;
HashSet <byte> outputTerminationSymbol = new HashSet <byte>();
string outputTerminationString = "";
switch (option)
{
case AlphabetsTypes.Protein:
alphabetInstance = ProteinAlphabet.Instance;
break;
case AlphabetsTypes.Rna:
alphabetInstance = RnaAlphabet.Instance;
break;
case AlphabetsTypes.Dna:
alphabetInstance = DnaAlphabet.Instance;
break;
}
if (option.Equals(AlphabetsTypes.Protein))
{
Assert.AreEqual(true, alphabetInstance.TryGetDefaultTerminationSymbol(out outputDefaultTerminationSymbol));
Assert.AreEqual(true, alphabetInstance.TryGetTerminationSymbols(out outputTerminationSymbol));
outputTerminationString = new string(outputTerminationSymbol.Select(a => (char)a).ToArray());
Assert.AreEqual('*', (char)outputDefaultTerminationSymbol);
Assert.AreEqual("*", outputTerminationString);
}
else
{
Assert.AreEqual(false, alphabetInstance.TryGetDefaultTerminationSymbol(out outputDefaultTerminationSymbol));
Assert.AreEqual(false, alphabetInstance.TryGetTerminationSymbols(out outputTerminationSymbol));
}
ApplicationLog.WriteLine(string.Concat("Alphabets BVT: Validation of Get Default termination symbol for",
option, " completed successfully."));
}
void TryGetComplementSymbol(AlphabetsTypes option)
{
IAlphabet alphabetInstance = null;
byte inputByte = 0, complementByte = 0, outputByte = 0;
switch (option)
{
case AlphabetsTypes.Protein:
alphabetInstance = ProteinAlphabet.Instance;
inputByte = (byte)'F';
complementByte = (byte)'U';
break;
case AlphabetsTypes.Rna:
alphabetInstance = RnaAlphabet.Instance;
inputByte = (byte)'A';
complementByte = (byte)'U';
break;
case AlphabetsTypes.Dna:
alphabetInstance = DnaAlphabet.Instance;
inputByte = (byte)'A';
complementByte = (byte)'T';
break;
}
if (!option.Equals(AlphabetsTypes.Protein))
{
Assert.AreEqual(true, alphabetInstance.TryGetComplementSymbol(inputByte, out outputByte));
Assert.AreEqual(complementByte, outputByte);
}
else
{
Assert.AreEqual(false, alphabetInstance.TryGetComplementSymbol(inputByte, out outputByte));
}
ApplicationLog.WriteLine(string.Concat("Alphabets BVT: Validation of Get Complement operation for",
option, " completed successfully."));
}
void GetDefaultTerminationSymbol(AlphabetsTypes option)
{
IAlphabet alphabetInstance = null;
byte outputDefaultTerminationSymbol = 0;
HashSet<byte> outputTerminationSymbol = new HashSet<byte>();
string outputTerminationString = "";
switch (option)
{
case AlphabetsTypes.Protein:
alphabetInstance = ProteinAlphabet.Instance;
break;
case AlphabetsTypes.Rna:
alphabetInstance = RnaAlphabet.Instance;
break;
case AlphabetsTypes.Dna:
alphabetInstance = DnaAlphabet.Instance;
break;
}
if (option.Equals(AlphabetsTypes.Protein))
{
Assert.AreEqual(true, alphabetInstance.TryGetDefaultTerminationSymbol(out outputDefaultTerminationSymbol));
Assert.AreEqual(true, alphabetInstance.TryGetTerminationSymbols(out outputTerminationSymbol));
outputTerminationString = new string(outputTerminationSymbol.Select(a => (char)a).ToArray());
Assert.AreEqual('*', (char)outputDefaultTerminationSymbol);
Assert.AreEqual("*", outputTerminationString);
}
else
{
Assert.AreEqual(false, alphabetInstance.TryGetDefaultTerminationSymbol(out outputDefaultTerminationSymbol));
Assert.AreEqual(false, alphabetInstance.TryGetTerminationSymbols(out outputTerminationSymbol));
}
ApplicationLog.WriteLine(string.Concat("Alphabets BVT: Validation of Get Default termination symbol for",
option, " completed successfully."));
}
void TryGetComplementSymbol(AlphabetsTypes option)
{
IAlphabet alphabetInstance = null;
byte inputByte = 0, complementByte = 0, outputByte = 0;
switch (option)
{
case AlphabetsTypes.Protein:
alphabetInstance = ProteinAlphabet.Instance;
inputByte = (byte)'F';
complementByte = (byte)'U';
break;
case AlphabetsTypes.Rna:
alphabetInstance = RnaAlphabet.Instance;
inputByte = (byte)'A';
complementByte = (byte)'U';
break;
case AlphabetsTypes.Dna:
alphabetInstance = DnaAlphabet.Instance;
inputByte = (byte)'A';
complementByte = (byte)'T';
break;
}
if (!option.Equals(AlphabetsTypes.Protein))
{
Assert.AreEqual(true, alphabetInstance.TryGetComplementSymbol(inputByte, out outputByte));
Assert.AreEqual(complementByte, outputByte);
}
else
{
Assert.AreEqual(false, alphabetInstance.TryGetComplementSymbol(inputByte, out outputByte));
}
ApplicationLog.WriteLine(string.Concat("Alphabets BVT: Validation of Get Complement operation for",
option, " completed successfully."));
}