async Task <APIGatewayProxyResponse> CreatePostResponse(JObject input, ILambdaContext context)
{
JObject preference = new Preference().preference;
int statusCode = (input != null) ?
(int)HttpStatusCode.OK :
(int)HttpStatusCode.InternalServerError;
string sn = input["sn"].ToString();
AllMeta allMeta = new AllMeta(tableRegion: preference["Dynamo"]["MetaGenotype"]["Region"].ToString(),
tableName: preference["Dynamo"]["MetaGenotype"]["Name"].ToString());
HashSet <string> codes = input.ContainsKey("codes") ? ((JArray)input["codes"]).Select(x => x.ToString()).ToHashSet() : allMeta.codes;
string apiKey = preference == null?System.Environment.GetEnvironmentVariable("APIKey") : preference["API"]["InternalCalcGenoRiskAPIFunction-API"]["key"].ToString();
string apiUrl = preference == null?System.Environment.GetEnvironmentVariable("APIUrl") : preference["API"]["InternalCalcGenoRiskAPIFunction-API"]["url"].ToString();
JObject apiBody = new JObject();
apiBody["sn"] = sn;
apiBody["codes"] = new JArray(codes);
HttpClient client = new HttpClient();
client.DefaultRequestHeaders.Add("X-API-Key", apiKey);
client.DefaultRequestHeaders.Add("X-Amz-Invocation-Type", "Event");
await client.PostAsync(apiUrl, new StringContent(apiBody.ToString()));
var response = new APIGatewayProxyResponse
{
StatusCode = statusCode,
Body = "",
Headers = new Dictionary <string, string>
{
{ "Content-Type", "application/json" },
{ "Access-Control-Allow-Origin", "*" }
}
};
return(response);
}
async Task <APIGatewayProxyResponse> CreatePostResponse(JObject input, ILambdaContext context)
{
JObject preference = new Preference().preference;
int statusCode = (input != null) ?
(int)HttpStatusCode.OK :
(int)HttpStatusCode.InternalServerError;
string sn = input["sn"].ToString();
string tableRegionResult = input.ContainsKey("tableRegionResult") ?
input["tableRegionResult"].ToString() :
preference["Dynamo"]["Result"]["Region"].ToString();
string tableNameResult = input.ContainsKey("tableNameResult") ?
input["tableNameResult"].ToString() :
preference["Dynamo"]["Result"]["Name"].ToString();
AllMeta allMeta = new AllMeta(tableRegion: preference["Dynamo"]["MetaGenotype"]["Region"].ToString(),
tableName: preference["Dynamo"]["MetaGenotype"]["Name"].ToString());
HashSet <string> codes = input.ContainsKey("codes") ? JArray.Parse(input["codes"].ToString()).Select(code => code.ToString()).ToHashSet() : allMeta.codes;
Plink.Plink plink = readPlinkS3(bucketRegion: preference["S3"]["Plink"]["Region"].ToString(),
bucketName: preference["S3"]["Plink"]["Name"].ToString(),
keyFAM: sn + ".fam",
keyBED: sn + ".bed",
keyBIMFile: sn + "_bim.txt",
bucketRegionBIM: preference["S3"]["BPM"]["Region"].ToString(),
bucketNameBIM: preference["S3"]["BPM"]["Name"].ToString());
foreach (string code in codes)
{
var result = Calculate.calcGenotype(code: code,
sn: sn,
plink: plink);
List <Document> resultDocs = readDynamoTable(tableRegion: tableRegionResult,
tableName: tableNameResult,
hashKey: sn,
queryFilter: new QueryFilter()).Where(doc => doc["code"].ToString() == code).ToList();
Document resultDoc = resultDocs.Count > 0 ? resultDocs[0] : new Document();
JObject resultJobj = resultDoc.ContainsKey("result") ? JObject.Parse(resultDoc["result"].ToString()) : new JObject();
resultDoc["sn"] = sn;
resultDoc["code"] = code;
JObject resultGenotype = new JObject();
resultGenotype["risk"] = result.result.ToString();
resultJobj["genotype"] = resultGenotype;
resultDoc["result"] = resultJobj.ToString();
await writeDynamoTable(tableRegion : tableRegionResult,
tableName : tableNameResult,
writeDocument : resultDoc);
string apiKey = preference == null?System.Environment.GetEnvironmentVariable("APIKey") : preference["API"]["InternalSimulationAPIFunction-API"]["key"].ToString();
string apiUrl = preference == null?System.Environment.GetEnvironmentVariable("APIUrl") : preference["API"]["InternalSimulationAPIFunction-API"]["url"].ToString();
JObject apiBody = new JObject();
apiBody["sn"] = sn;
apiBody["code"] = code;
apiBody["type"] = "genotype";
apiBody["meta"] = new JArray(result.metas.Select(meta =>
{
JToken jt = meta["meta"];
jt["var"] = meta["var"];
return(jt);
}).ToList());
HttpClient client = new HttpClient();
client.DefaultRequestHeaders.Add("X-API-Key", apiKey);
client.DefaultRequestHeaders.Add("X-Amz-Invocation-Type", "Event");
await client.PostAsync(apiUrl, new StringContent(apiBody.ToString()));
}
var response = new APIGatewayProxyResponse
{
StatusCode = statusCode,
Body = "",
Headers = new Dictionary <string, string>
{
{ "Content-Type", "application/json" },
{ "Access-Control-Allow-Origin", "*" }
}
};
return(response);
}
