private void CreatePatientSummaryAndLink(ReportInstance reportInstance, ActivityExecutionStatusEvent newEvent)
{
ArtefactInfoModel path = null;
if (reportInstance.WorkFlow.Description == "New Active Surveilliance Report")
{
var clinicalEvt = _unitOfWork.Repository <PatientClinicalEvent>().Queryable().Single(pce => pce.PatientClinicalEventGuid == reportInstance.ContextGuid);
var extendable = (IExtendable)clinicalEvt;
var extendableValue = extendable.GetAttributeValue("Is the adverse event serious?");
var isSerious = extendableValue != null?extendableValue.ToString() == "1" ? true : false : false;
path = _artefactService.CreatePatientSummaryForActiveReport(reportInstance.ContextGuid, isSerious);
}
else
{
var sourceInstance = _unitOfWork.Repository <DatasetInstance>().Queryable().Single(di => di.DatasetInstanceGuid == reportInstance.ContextGuid);
var isSerious = sourceInstance.GetInstanceValue(_unitOfWork.Repository <DatasetElement>().Queryable().Single(dse => dse.DatasetElementGuid.ToString() == "302C07C9-B0E0-46AB-9EF8-5D5C2F756BF1"));
path = _artefactService.CreatePatientSummaryForSpontaneousReport(reportInstance.ContextGuid, (!String.IsNullOrWhiteSpace(isSerious)));
}
// Create patient summary and link to event
Attachment att;
AttachmentType attType = _unitOfWork.Repository <AttachmentType>().Queryable().Single(at => at.Key == "docx");
FileStream tempFile = File.OpenRead(path.FullPath);
if (tempFile.Length > 0)
{
BinaryReader rdr = new BinaryReader(tempFile);
byte[] buffer = rdr.ReadBytes((int)tempFile.Length);
// Create the attachment
att = new Attachment
{
ActivityExecutionStatusEvent = newEvent,
Description = "PatientSummary",
FileName = Path.GetFileName(path.FileName),
AttachmentType = attType,
Size = tempFile.Length,
Content = buffer
};
newEvent.Attachments.Add(att);
_unitOfWork.Repository <Attachment>().Save(att);
}
tempFile.Close();
tempFile = null;
}
private void CreateE2BExtractAndLink(ReportInstance reportInstance, ActivityExecutionStatusEvent newEvent)
{
ArtefactInfoModel path = null;
var activityInstance = reportInstance.CurrentActivity;
DatasetInstance datasetInstance = null;
var evt = activityInstance.ExecutionEvents.OrderByDescending(ee => ee.EventDateTime).First(ee => ee.ExecutionStatus.Description == "E2BINITIATED");
var tag = (reportInstance.WorkFlow.Description == "New Active Surveilliance Report") ? "Active" : "Spontaneous";
datasetInstance
= _unitOfWork.Repository <DatasetInstance>()
.Queryable()
.Include("DatasetInstanceValues.DatasetElement.Field.FieldType")
.Include("DatasetInstanceValues.DatasetInstanceSubValues.DatasetElementSub.Field.FieldType")
.Where(di => di.Tag == tag &&
di.ContextID == evt.Id).SingleOrDefault();
path = _artefactService.CreateE2B(datasetInstance.Id);
Attachment att;
AttachmentType attType = _unitOfWork.Repository <AttachmentType>().Queryable().Single(at => at.Key == "xml");
FileStream tempFile = File.OpenRead(path.FullPath);
if (tempFile.Length > 0)
{
BinaryReader rdr = new BinaryReader(tempFile);
byte[] buffer = rdr.ReadBytes((int)tempFile.Length);
// Create the attachment
att = new Attachment
{
ActivityExecutionStatusEvent = newEvent,
Description = "E2b",
FileName = Path.GetFileName(path.FileName),
AttachmentType = attType,
Size = tempFile.Length,
Content = buffer
};
newEvent.Attachments.Add(att);
_unitOfWork.Repository <Attachment>().Save(att);
}
tempFile.Close();
tempFile = null;
}
private void CreatePatientExtractAndLink(ReportInstance reportInstance, ActivityExecutionStatusEvent newEvent)
{
ArtefactInfoModel path = null;
if (reportInstance.WorkFlow.Description == "New Active Surveilliance Report")
{
var clinicalEvt = _unitOfWork.Repository <PatientClinicalEvent>().Queryable().Single(pce => pce.PatientClinicalEventGuid == reportInstance.ContextGuid);
path = _artefactService.CreateActiveDatasetForDownload(clinicalEvt.Patient.Id);
}
else
{
var sourceInstance = _unitOfWork.Repository <DatasetInstance>().Queryable().Single(di => di.DatasetInstanceGuid == reportInstance.ContextGuid);
path = _artefactService.CreateDatasetInstanceForDownload(sourceInstance.Id);
}
// Create patient summary and link to event
Attachment att;
AttachmentType attType = _unitOfWork.Repository <AttachmentType>().Queryable().Single(at => at.Key == "xlsx");
FileStream tempFile = File.OpenRead(path.FullPath);
if (tempFile.Length > 0)
{
BinaryReader rdr = new BinaryReader(tempFile);
byte[] buffer = rdr.ReadBytes((int)tempFile.Length);
// Create the attachment
att = new Attachment
{
ActivityExecutionStatusEvent = newEvent,
Description = "PatientExtract",
FileName = Path.GetFileName(path.FileName),
AttachmentType = attType,
Size = tempFile.Length,
Content = buffer
};
newEvent.Attachments.Add(att);
_unitOfWork.Repository <Attachment>().Save(att);
}
tempFile.Close();
tempFile = null;
}
private async Task CreatePatientSummaryAndLinkToExecutionEventAsync(ReportInstance reportInstance, ActivityExecutionStatusEvent executionEvent)
{
if (reportInstance is null)
{
throw new ArgumentNullException(nameof(reportInstance));
}
if (executionEvent is null)
{
throw new ArgumentNullException(nameof(executionEvent));
}
var artefactModel = reportInstance.WorkFlow.Description == "New Active Surveilliance Report" ?
await _artefactService.CreatePatientSummaryForActiveReportAsync(reportInstance.ContextGuid) :
await _artefactService.CreatePatientSummaryForSpontaneousReportAsync(reportInstance.ContextGuid);
using (var tempFile = File.OpenRead(artefactModel.FullPath))
{
if (tempFile.Length > 0)
{
BinaryReader rdr = new BinaryReader(tempFile);
executionEvent.AddAttachment(Path.GetFileName(artefactModel.FileName),
await _attachmentTypeRepository.GetAsync(at => at.Key == "docx"),
tempFile.Length,
rdr.ReadBytes((int)tempFile.Length),
"PatientSummary");
}
}
}
private async Task CreateE2BExtractAndLinkToExecutionEventAsync(ReportInstance reportInstance, ActivityExecutionStatusEvent executionEvent)
{
if (reportInstance is null)
{
throw new ArgumentNullException(nameof(reportInstance));
}
if (executionEvent is null)
{
throw new ArgumentNullException(nameof(executionEvent));
}
var e2bInstance = await GetDatasetInstance(reportInstance);
if (e2bInstance == null)
{
throw new KeyNotFoundException($"Unable to locate E2B dataset for report {reportInstance.Id} for XML generation");
}
var artefactModel = await _xmlDocumentService.CreateE2BDocumentAsync(e2bInstance);
using (var tempFile = File.OpenRead(artefactModel.FullPath))
{
if (tempFile.Length > 0)
{
BinaryReader rdr = new BinaryReader(tempFile);
executionEvent.AddAttachment(Path.GetFileName(artefactModel.FileName),
_unitOfWork.Repository <AttachmentType>().Queryable().Single(at => at.Key == "xml"),
tempFile.Length,
rdr.ReadBytes((int)tempFile.Length),
"E2b");
}
}
}
