public HTMLReportGenerator(TargetedResultRepository repo, FileInputsInfo fileInputs)
{
_resultRepository = repo;
_fileInputsInfo = fileInputs;
_resultsWithImageInfo = new List<ResultWithImageInfo>();
foreach (var targetedResultDto in repo.Results)
{
ResultWithImageInfo r = new ResultWithImageInfo((SipperLcmsFeatureTargetedResultDTO)targetedResultDto);
_resultsWithImageInfo.Add(r);
}
GetImageFileReferences(_fileInputsInfo.ResultImagesFolderPath);
MapResultsToImages();
}
protected void addHTMLForChromImage(HtmlTextWriter writer, ResultWithImageInfo resultWithImageInfo)
{
string relFilePath = GetRelativeFilePath(resultWithImageInfo.ChromImageFilePath);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.AddAttribute(HtmlTextWriterAttribute.Href, relFilePath);
writer.RenderBeginTag(HtmlTextWriterTag.A);
writer.AddAttribute(HtmlTextWriterAttribute.Src, relFilePath);
writer.AddAttribute(HtmlTextWriterAttribute.Width, ChromImageWidth.ToString("0"));
writer.AddAttribute(HtmlTextWriterAttribute.Height, ChromImageHeight.ToString("0"));
writer.RenderBeginTag(HtmlTextWriterTag.Img);
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderEndTag();
}
private string getHTMLForTableRow(ResultWithImageInfo resultWithImageInfo)
{
StringWriter stringWriter = new StringWriter();
using (HtmlTextWriter writer = new HtmlTextWriter(stringWriter))
{
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
//add feature info table to a cell within the table
writer.RenderBeginTag(HtmlTextWriterTag.Td);
addResultInfoTable(writer, resultWithImageInfo);
writer.RenderEndTag();
addHTMLForChromImage(writer, resultWithImageInfo);
addHTMLForTheorMSImage(writer, resultWithImageInfo);
addHTMLForMSImage(writer, resultWithImageInfo);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
addAnnotationTable(writer, resultWithImageInfo);
writer.RenderEndTag();
//this is a hook so that sub-classes can add additional stuff here
//addHTMLForOtherData(writer);
writer.RenderEndTag();
}
return stringWriter.ToString();
}
private void addResultInfoTable(HtmlTextWriter writer, ResultWithImageInfo resultWithImageInfo)
{
writer.AddAttribute(HtmlTextWriterAttribute.Style, "color:firebrick; font-style:bold; font-family:Calibri; font-size:100%");
writer.AddAttribute(HtmlTextWriterAttribute.Width, "200");
writer.RenderBeginTag(HtmlTextWriterTag.Table);
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("TargetID");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.TargetID);
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("MassTagID");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.MatchedMassTagID);
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("Scan");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.ScanLC);
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("Intensity");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.Intensity);
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("MonoMass");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.MonoMass.ToString("0.0000"));
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("MonoMZ");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.MonoMZ.ToString("0.0000"));
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("z");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.ChargeState);
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("i_score");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.IScore);
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("RawAreaMetric");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.AreaUnderRatioCurve.ToString("0.0"));
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("RevisedArea");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.AreaUnderRatioCurveRevised.ToString("0.0"));
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("Linearity");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.RSquaredValForRatioCurve.ToString("0.000"));
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("ChromCorr_Med");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.ChromCorrelationMedian.ToString("0.000"));
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("ChromCorr_Avg");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.ChromCorrelationAverage.ToString("0.000"));
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("ChromCorr_StDev");
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write(resultWithImageInfo.Result.ChromCorrelationStdev.ToString("0.0000"));
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderEndTag();
}
private void addAnnotationTable(HtmlTextWriter writer, ResultWithImageInfo resultWithImageInfo)
{
writer.AddAttribute(HtmlTextWriterAttribute.Style, "color:black; font-style:bold; font-family:Calibri; font-size:125%");
writer.AddAttribute(HtmlTextWriterAttribute.Width, "100");
writer.RenderBeginTag(HtmlTextWriterTag.Table);
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
if (resultWithImageInfo.Result.ValidationCode == ValidationCode.None)
{
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderWidth, "2");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderColor, "Black");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderStyle, "Solid");
writer.AddStyleAttribute(HtmlTextWriterStyle.BackgroundColor, "White");
}
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("None");
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
if (resultWithImageInfo.Result.ValidationCode == ValidationCode.Yes)
{
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderWidth, "2");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderColor, "Black");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderStyle, "Solid");
writer.AddStyleAttribute(HtmlTextWriterStyle.BackgroundColor, "LightGreen");
}
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("Yes");
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
if (resultWithImageInfo.Result.ValidationCode == ValidationCode.No)
{
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderWidth, "2");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderColor, "Black");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderStyle, "Solid");
writer.AddStyleAttribute(HtmlTextWriterStyle.BackgroundColor, "Tomato");
}
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("No");
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderBeginTag(HtmlTextWriterTag.Tr);
if (resultWithImageInfo.Result.ValidationCode == ValidationCode.Maybe)
{
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderWidth, "2");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderColor, "Black");
writer.AddStyleAttribute(HtmlTextWriterStyle.BorderStyle, "Solid");
writer.AddStyleAttribute(HtmlTextWriterStyle.BackgroundColor, "LightYellow");
}
writer.RenderBeginTag(HtmlTextWriterTag.Td);
writer.Write("Maybe");
writer.RenderEndTag();
writer.RenderEndTag();
writer.RenderEndTag();
}
public void SetResults()
{
GeneralStatusMessage = "";
if (_resultRepositorySource == null) return;
var query = (from n in _resultRepositorySource.Results select (SipperLcmsFeatureTargetedResultDTO)n);
Results.Clear();
foreach (var resultDto in query)
{
ResultWithImageInfo resultWithImageInfo = new ResultWithImageInfo(resultDto);
Results.Add(resultWithImageInfo);
}
TargetsFileStatusText = Results.Count + " loaded.";
MapResultsToImages();
GenerateHTMLReport();
}
