public MassTagMatchedViewModel(ClusterToMassTagMap match) { m_match = match; m_tag = match.MassTag; MatchedProteins = new ObservableCollection <ProteinViewModel>(); LoadProteinData(m_tag); }
/// <summary> /// Writes the peak matching results to the local peak matching database. /// </summary> public void WritePeakMatchResults(PeakMatchingResults <UMCClusterLight, MassTagLight> results, MassTagDatabase database, out int matchedMassTags, out int matchedProteins) { var clusterToMassTagMapDaoHibernate = new ClusterToMassTagMapDAOHibernate(); var stacFdrdaoHibernate = new STACDAOHibernate(); var massTagList = new List <MassTagLight>(); var proteinList = new Dictionary <int, Protein>(); var clusterToMassTagMapList = new List <ClusterToMassTagMap>(); clusterToMassTagMapDaoHibernate.ClearAll(); stacFdrdaoHibernate.ClearAll(); foreach (var match in results.Matches) { var tag = match.Target; var feature = match.Observed; var clusterToMassTagMap = new ClusterToMassTagMap(feature.Id, tag.Id); clusterToMassTagMap.ConformerId = tag.ConformationId; if (!clusterToMassTagMapList.Contains(clusterToMassTagMap)) { clusterToMassTagMapList.Add(clusterToMassTagMap); clusterToMassTagMap.StacScore = match.Confidence; clusterToMassTagMap.StacUP = match.Uniqueness; } if (!massTagList.Contains(tag)) { massTagList.Add(tag); } var databaseContainsProtein = database.Proteins.ContainsKey(tag.Id); if (databaseContainsProtein) { var proteins = database.Proteins[tag.Id]; foreach (var protein in proteins.Where(protein => !proteinList.ContainsKey(protein.ProteinId))) { proteinList.Add(protein.ProteinId, protein); } } } var uniqueProteins = new List <Protein>(); foreach (var protein in proteinList.Values) { uniqueProteins.Add(protein); } matchedMassTags = massTagList.Count; matchedProteins = uniqueProteins.Count; clusterToMassTagMapDaoHibernate.AddAll(clusterToMassTagMapList); stacFdrdaoHibernate.AddAll(results.FdrTable); }
public MassTagMatchTreeViewModel(ClusterToMassTagMap match, UMCClusterTreeViewModel parent) { m_match = match; m_parent = parent; }
private void m_dataGrid_SelectionChanged(object sender, SelectionChangedEventArgs e) { var tag = m_dataGrid.SelectedItem as ClusterToMassTagMap; SelectedTag = tag; }