This repository holds sources of Quanti workflow - software for label-free quantitative proteomics analysis by mass spectrometry data. To get Installation package for Windows (32/64-bit), additional project documentation and test files, please, access the project page http://pkki.mbb.ki.se/Quanti/ The ready-to-build for Win64 solution for Visual Studio 2010 located in Quanti Workflow subfolder. To build 32-bit applications you have to change in appropriate binary folders 64-bit files of SQLite to 32-bit ones provided in /SQLite32 folder. Also for access to Thermo .raw files you have to download and install MSFileReader (http://sjsupport.thermofinnigan.com/public/detail.asp?id=703) and register (regsvr32 [DllFileName]) XRawFile2.dll for 32-bit Windows or XRawFile2_x64.dll for 64-bit Windows.

For citation, please use: In silico instrumental response correction improves precision of label-free proteomics and accuracy of proteomics-based predictive models. Lyutvinskiy Y, Yang H, Rutishauser D, Zubarev RA. Mol Cell Proteomics. 2013 Aug;12(8):2324-31. doi: 10.1074/mcp.O112.023804. Epub 2013 Apr 15.