// Creates AIM Annotation(s) based on user template/image selection and our internal preferences
// Returns a list of the created annotations and a list of IGraphic elements used to create the annotations.
// The list of graphic elements is used later to replace these elements with AimGraphics
private List <aim_dotnet.Annotation> CreateAnnotationsFromUserInput(out List <IGraphic> annotationsGraphic)
{
AimAnnotationCreationContext aimContext = new AimAnnotationCreationContext(AnnotationKind.AK_ImageAnnotation, AnnotationTypeCode, AnnotationName);
aimContext.SelectedAnatomicEntities = this.SelectedAnatomicEntities;
aimContext.SelectedImagingObservations = this.SelectedImagingObservations;
aimContext.SelectedInferences = this.SelectedInferences;
aimContext.AnnotationUser = (!string.IsNullOrEmpty(this.UserName) && !string.IsNullOrEmpty(this.LoginName))
?
new User
{
Name = this.UserName,
LoginName = this.LoginName,
RoleInTrial = this.RoleInTrial,
NumberWithinRoleOfClinicalTrial = this.NumberWithinRoleInTrial >= 0 ? this.NumberWithinRoleInTrial : -1
}
: null;
aimContext.includeCalculations = true; // !this.VasariTemplateVisible; // no calculations for VASARI
// !!! Create annotation for the current image only !!!
aimContext.SOPImageUIDs = new List <string> {
((IImageSopProvider)this.ImageViewer.SelectedPresentationImage).ImageSop.SopInstanceUid
};
// aim_dotnet.Annotation annotation = AIMHelpers.CreateAimAnnotation(this.ImageViewer.SelectedPresentationImage, aimContext);
return(AimHelpers.CreateAimAnnotations(this.ImageViewer.SelectedPresentationImage.ParentDisplaySet.PresentationImages, aimContext, out annotationsGraphic));
}
private List <aim_dotnet.Annotation> CreateAnnotationsFromUserInput(out List <IGraphic> annotationsGraphic)
{
var aimContext = new AimAnnotationCreationContext(AnnotationKind.AK_ImageAnnotation, AnnotationTypeCode, AnnotationName);
aimContext.SelectedAnatomicEntities = SelectedAnatomicEntities;
aimContext.SelectedImagingObservations = SelectedImagingObservations;
aimContext.SelectedInferences = SelectedInferences;
aimContext.AnnotationUser = (!string.IsNullOrEmpty(UserName) && !string.IsNullOrEmpty(LoginName))
?
new User
{
Name = UserName,
LoginName = LoginName,
RoleInTrial = RoleInTrial,
NumberWithinRoleOfClinicalTrial = NumberWithinRoleInTrial >= 0 ? NumberWithinRoleInTrial : -1
}
: null;
aimContext.includeCalculations = true;
aimContext.SOPImageUIDs = new List <string> {
((IImageSopProvider)ImageViewer.SelectedPresentationImage).ImageSop.SopInstanceUid
};
return(AimHelpers.CreateAimAnnotations(ImageViewer.SelectedPresentationImage.ParentDisplaySet.PresentationImages, aimContext, out annotationsGraphic));
}
private static aim_dotnet.ImageAnnotation CreateImageAnnotation(IImageSopProvider imageSop, AimAnnotationCreationContext creationContext)
{
// Create Basic Image Annotation
Platform.CheckTrue(creationContext.SelectedAnnotationKind == aim_dotnet.AnnotationKind.AK_ImageAnnotation, "ImageAnnotationKind");
Platform.CheckForEmptyString(creationContext.AnnotationName, "AnnotationName");
var imgAnnotation = new aim_dotnet.ImageAnnotation();
imgAnnotation.CodeValue = creationContext.AnnotationTypeCode.CodeValue;
imgAnnotation.CodeMeaning = creationContext.AnnotationTypeCode.CodeMeaning;
imgAnnotation.CodingSchemeDesignator = creationContext.AnnotationTypeCode.CodingSchemeDesignator;
imgAnnotation.CodingSchemeVersion = creationContext.AnnotationTypeCode.CodingSchemeVersion;
imgAnnotation.UniqueIdentifier = DicomUid.GenerateUid().UID;
imgAnnotation.Name = creationContext.AnnotationName;
imgAnnotation.DateTime = DateTime.Now;
imgAnnotation.Patient = CreatePatient(imageSop);
imgAnnotation.Equipment = CreateEquipment();
if (creationContext.AnnotationUser != null)
imgAnnotation.User = new aim_dotnet.User(creationContext.AnnotationUser);
if (!string.IsNullOrEmpty(creationContext.AnnotationComment))
imgAnnotation.Comment = creationContext.AnnotationComment;
if (creationContext.SelectedAnatomicEntities != null)
imgAnnotation.AnatomyEntityCollection = new List<aim_dotnet.AnatomicEntity>(creationContext.SelectedAnatomicEntities);
if (creationContext.SelectedImagingObservations != null)
imgAnnotation.ImagingObservationCollection = new List<aim_dotnet.ImagingObservation>(creationContext.SelectedImagingObservations);
if (creationContext.SelectedInferences != null)
imgAnnotation.InferenceCollection = new List<aim_dotnet.Inference>(creationContext.SelectedInferences);
return imgAnnotation;
}
public static List<aim_dotnet.Annotation> CreateAimAnnotations(IEnumerable<IPresentationImage> presentationImages, AimAnnotationCreationContext creationContext, out List<IGraphic> annotationsGraphic)
{
var annotations = new List<aim_dotnet.Annotation>();
annotationsGraphic = new List<IGraphic>();
if (creationContext.SelectedAnnotationKind == aim_dotnet.AnnotationKind.AK_ImageAnnotation)
{
var annotationSOPs = creationContext.SOPImageUIDs;
foreach (var currentImage in presentationImages)
{
var currentImageSOP = currentImage as IImageSopProvider;
if (currentImageSOP == null)
continue;
if (annotationSOPs.Count > 0 && !annotationSOPs.Contains(currentImageSOP.ImageSop.SopInstanceUid))
continue;
var currentOverlayGraphics = currentImage as IOverlayGraphicsProvider;
if (currentOverlayGraphics != null)
{
// Create one annotation per calculation/geo shape
var shapeIdentifier = 0;
var geoShapes = new List<aim_dotnet.IGeometricShape>();
var calculations = creationContext.includeCalculations ? new List<aim_dotnet.Calculation>() : null;
var textAnnotations = new List<aim_dotnet.TextAnnotation>();
foreach (var graphic in currentOverlayGraphics.OverlayGraphics)
{
var currentRoiGraphic = graphic as RoiGraphic;
if (currentRoiGraphic != null && currentRoiGraphic.Roi != null)
{
// Create Geo Shape for this ROI
var geoShape = Create2DGeoShape(currentRoiGraphic, currentImageSOP.ImageSop.SopInstanceUid, currentImageSOP.Frame.FrameNumber);
if (geoShape != null)
{
geoShape.ShapeIdetifier = shapeIdentifier++;
if (calculations != null)
calculations.AddRange(CreateCalculations(currentRoiGraphic, geoShape.ShapeIdetifier));
geoShapes.Add(geoShape);
annotationsGraphic.Add(graphic);
}
}
else if (graphic is ContextMenuControlGraphic)
{
var contextMenuControlGraphic = (ContextMenuControlGraphic) graphic;
if (contextMenuControlGraphic.Subject != null)
{
var textAnnotation =
CreateTextAnnotation(contextMenuControlGraphic.Subject, currentImageSOP.ImageSop.SopInstanceUid, currentImageSOP.Frame.FrameNumber);
if (textAnnotation != null)
{
if (textAnnotation.ConnectorPoints != null)
textAnnotation.ConnectorPoints.ShapeIdetifier = shapeIdentifier++;
textAnnotations.Add(textAnnotation);
annotationsGraphic.Add(graphic);
}
}
}
}
if (annotationSOPs.Count > 0 || geoShapes.Count > 0 || (calculations != null && calculations.Count > 0) || textAnnotations.Count > 0)
{
var imgAnn = CreateImageAnnotation(currentImageSOP, creationContext);
if (geoShapes.Count > 0)
imgAnn.GeometricShapeCollection = geoShapes;
if (calculations != null && calculations.Count > 0)
imgAnn.CalculationCollection = calculations;
if (textAnnotations.Count > 0)
imgAnn.TextAnnotationCollection = textAnnotations;
AddDicomImageReference(imgAnn, currentImageSOP);
annotations.Add(imgAnn);
}
}
}
return annotations;
}
throw new NotImplementedException("Creation of AnnotationOfAnnotation objects is not yet supported ");
}
public static List<aim_dotnet.Annotation> CreateAimAnnotations(IEnumerable<IPresentationImage> presentationImages, AimAnnotationCreationContext creationContext, out List<IGraphic> annotationsGraphic)
{
List<aim_dotnet.Annotation> annotations = new List<aim_dotnet.Annotation>();
annotationsGraphic = new List<IGraphic>(); // list that includes all IGraphic objects used to create new annotations
if (creationContext.SelectedAnnotationKind == aim_dotnet.AnnotationKind.AK_ImageAnnotation)
{
List<string> annotationSOPs = creationContext.SOPImageUIDs;
// list of UIDs to include in the annotation. If empty, include all images from the same set which have markup.
foreach (IPresentationImage currentImage in presentationImages)
{
IImageSopProvider currentImageSOP = currentImage as IImageSopProvider;
if (currentImageSOP == null) // not an image?
continue;
// Skip the image if it's not included in our image annotation set
if (annotationSOPs.Count > 0 && !annotationSOPs.Contains(currentImageSOP.ImageSop.SopInstanceUid))
continue;
// Find all markups on the image
IOverlayGraphicsProvider currentOverlayGraphics = currentImage as IOverlayGraphicsProvider;
if (currentOverlayGraphics != null) // all images should implement IOverlayGraphicsProvider
{
// Create one annotation per calculation/geo shape
int shapeIdentifier = 0;
List<aim_dotnet.IGeometricShape> geoShapes = new List<aim_dotnet.IGeometricShape>();
List<aim_dotnet.Calculation> calculations = creationContext.includeCalculations ? new List<aim_dotnet.Calculation>() : null;
foreach (IGraphic graphic in currentOverlayGraphics.OverlayGraphics)
{
RoiGraphic currentRoiGraphic = graphic as RoiGraphic;
if (currentRoiGraphic != null && currentRoiGraphic.Roi != null)
{
// Create Geo Shape for this ROI
aim_dotnet.IGeometricShape geoShape = Create2DGeoShape(currentRoiGraphic, currentImageSOP.ImageSop.SopInstanceUid, currentImageSOP.Frame.FrameNumber);
if (geoShape != null)
{
// Shape Identifier is just a count
geoShape.ShapeIdetifier = shapeIdentifier++;
// Get calcualtions for this ROI, if required
if (calculations != null)
calculations.AddRange(CreateCalculations(currentRoiGraphic, geoShape.ShapeIdetifier));
geoShapes.Add(geoShape);
annotationsGraphic.Add(graphic);
}
}
}
// Create annotation if:
// 1. we are explicitly asked to create an annotation for this SOP, or
// 2. image has markup(s), or
// 3. image has calculation(s)
if (annotationSOPs.Count > 0 || geoShapes.Count > 0 || (calculations != null && calculations.Count > 0))
{
aim_dotnet.ImageAnnotation imgAnn = CreateImageAnnotation(currentImageSOP, creationContext);
if (geoShapes.Count > 0)
imgAnn.GeometricShapeCollection = geoShapes;
if (calculations != null && calculations.Count > 0)
imgAnn.CalculationCollection = calculations;
// Add current image reference to the annotation
AddDicomImageReference(imgAnn, currentImageSOP);
annotations.Add(imgAnn);
}
}
}
return annotations;
}
else
{
throw new NotImplementedException("Creation of AnnotationOfAnnotation objects is not yet supported ");
}
}
